View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_50 (Length: 256)
Name: NF2898_low_50
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_50 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 17211632 - 17211388
Alignment:
| Q |
13 |
aatataaaatgaatcattgaccaacatatcaagcaagcaatattgataacatactaagagagnnnnnnntggctcacag-ttaaagtgtaacaaactata |
111 |
Q |
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| T |
17211632 |
aatataaaatgaatcattgaccaacatatcaagcaagcaatattgataacatactaagagagaaaaaaatggctcacagcttaaagtgtaacaaactata |
17211533 |
T |
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| Q |
112 |
gattgaataaaatgtgttggaagctatgtagtcaattgcagatagccgtgtagcggtatgagtgctgtgtcgaaatctaaggaaataatacaaacacgtt |
211 |
Q |
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| T |
17211532 |
gattgaataaaatgtgttggaagctatgtagtcaattgcagatagccgtgtagcggtatgagtgctgtgtcgaaatctaaggaaataatacaaacatgtt |
17211433 |
T |
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| Q |
212 |
ataccatacacatgtaacgtctgaaaaatagaataatgcacaaaa |
256 |
Q |
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| T |
17211432 |
ataccatacacatgtaacgtcggacaaatagaataatgcacaaaa |
17211388 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 16189367 - 16189440
Alignment:
| Q |
187 |
tctaaggaaataatacaaacacgttataccataca----catgtaacgtctgaaaaatagaataatgcacaaaa |
256 |
Q |
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| T |
16189367 |
tctaaggaagtaatacaaagacattataccatacatacacatataacctctaaaaaatagaataatgcacaaaa |
16189440 |
T |
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