View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_55 (Length: 250)
Name: NF2898_low_55
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5494055 - 5494294
Alignment:
| Q |
1 |
ctatttctttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctcatcattgtgaagcttcaaaaagacatcatttgataccacatttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5494055 |
ctatttctttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctcatcattgtgaagcttcaaaaagacatcatttgataccacatttgaa |
5494154 |
T |
|
| Q |
101 |
aatttctcatgaaaaggcttctttgcttgcaatacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5494155 |
aatttctcatgaaaaggcttctttgcttgcaatacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagat |
5494254 |
T |
|
| Q |
201 |
ggaaaatctttaagtactttcatgaaatcatggtcctatg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5494255 |
ggaaaatctttaagtactttcatgaaatcatggtcctatg |
5494294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5524990 - 5525229
Alignment:
| Q |
1 |
ctatttctttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctcatcattgtgaagcttcaaaaagacatcatttgataccacatttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
5524990 |
ctatttctttcaatgttgttgagtccaaagcaagtttcaaagatctttcttctcatcattgtgaagcttcaaaaagacatcatttgatacccctattgaa |
5525089 |
T |
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| Q |
101 |
aatttctcatgaaaaggcttctttgcttgcaatacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagat |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525090 |
aaattctcatgaaaaggcttctttgcttgcaatacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagat |
5525189 |
T |
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| Q |
201 |
ggaaaatctttaagtactttcatgaaatcatggtcctatg |
240 |
Q |
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|||||||||| || ||||| |||||||||||||| |||| |
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| T |
5525190 |
ggaaaatcttcaaccacttttatgaaatcatggtcttatg |
5525229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 5482137 - 5481902
Alignment:
| Q |
4 |
tttctttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctcatcattgtgaagcttcaaaaagacatcatttgataccacatttgaaaat |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||| |||||||||||||| | |||||| | |
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| T |
5482137 |
tttccttcaatgttgttgagtccaaagaaagtttcaaaaatctttcttctaatcaatgtgaagctttaaaaaggcatcatttgataccccttttgaacac |
5482038 |
T |
|
| Q |
104 |
ttctcatgaaaaggcttctttgcttgcaatacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatgga |
203 |
Q |
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||| |||||||| ||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
5482037 |
ttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattggaatatcatcacaccatgctgctttagatgga |
5481938 |
T |
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| Q |
204 |
aaatctttaagtactttcatgaaatcatggtcctat |
239 |
Q |
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||||||| | ||||| |||||||||||||||||| |
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| T |
5481937 |
aaatcttccaccacttttatgaaatcatggtcctat |
5481902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 4978521 - 4978444
Alignment:
| Q |
133 |
tacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatggaaaatctt |
210 |
Q |
| |
|
||||||| ||||| ||||| ||| |||| ||||| ||||| ||||| ||||||||||| ||| | ||||||||||||| |
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| T |
4978521 |
tacaagtcactttttttcctaaccatggattttgtattggtataaccacacaccatgcagctgttgatggaaaatctt |
4978444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 4982638 - 4982561
Alignment:
| Q |
133 |
tacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatggaaaatctt |
210 |
Q |
| |
|
||||||| ||||| ||||| ||| |||| ||||| ||||| ||||| ||||||||||| ||| | ||||||||||||| |
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| T |
4982638 |
tacaagtcactttttttcctaaccatggattttgtattggtataaccacacaccatgcagctgttgatggaaaatctt |
4982561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 4995280 - 4995203
Alignment:
| Q |
133 |
tacaagttactttgtttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatggaaaatctt |
210 |
Q |
| |
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||||||| ||||| ||||| ||| |||| ||||| ||||| ||||| ||||||||||| ||| | ||||||||||||| |
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| T |
4995280 |
tacaagtcactttttttcctaaccatggattttgtattggtataaccacacaccatgcagctgttgatggaaaatctt |
4995203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 4095206 - 4095269
Alignment:
| Q |
147 |
tttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatggaaaatctt |
210 |
Q |
| |
|
||||| || |||||||||| ||||||||||| ||||||||||||| | | ||||||||||||| |
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| T |
4095206 |
tttccgaaaaatggtttttccattggaataagcacacaccatgctgttcttgatggaaaatctt |
4095269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 4189150 - 4189211
Alignment:
| Q |
147 |
tttccaaacaatggtttttgcattggaataacaacacaccatgctgctttagatggaaaatc |
208 |
Q |
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|||||||| | |||||||| ||||||||||| ||||||||||||| | | ||||||||||| |
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| T |
4189150 |
tttccaaaaagtggtttttccattggaataagcacacaccatgctggtcttgatggaaaatc |
4189211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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