View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_62 (Length: 247)
Name: NF2898_low_62
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_62 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6100292 - 6100526
Alignment:
| Q |
1 |
tagtgttttgtagatatgaacatgcctttttctacggtcttcattttgagtatgtattatacttatgaatcctagcttttatttttcttcagtgttcatg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100292 |
tagtgctttgtagatatgaacatgcctttttctacggtcttcattttgagtatttattatacttatgaatcctagcttttatttttcttcagtgttcatg |
6100391 |
T |
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| Q |
101 |
aaaacatggtaaatataggtgaatggggtaaataagacaaaggtattgaactataaaattactagaagatatgaggtgtcttgaactatatatagatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100392 |
aaaacatggtaaatataggtgaatggggtaaataagacaaaggtattgaactataaaattactagaagatatgaggtgtcttgaactatatatagatttt |
6100491 |
T |
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| Q |
201 |
acttagtctatggaaaattaatgcatgtacaatgt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6100492 |
acttagtctatggaaaattaatgcatgtacaatgt |
6100526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 364504 - 364272
Alignment:
| Q |
1 |
tagtgttttgtagatatgaacatgcctttttctacggtcttcattttgagtatgtattatacttatgaatcctagcttttatttttcttcagtgttcatg |
100 |
Q |
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|||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
364504 |
tagtgttttgtagatatgaacatgccctttt-tatggtcttcattttgagtatttattatacttatgaatcctaacttttatttttcttcggtgttcatg |
364406 |
T |
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| Q |
101 |
aaaacatggtaaatataggtgaatgggg----taaataagacaaaggtattgaactataaaattactagaagatatgaggtgtcttgaactatatataga |
196 |
Q |
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| T |
364405 |
aaaacatggtaaatataggtgaatggggtaattaaataagacaaaggtattgaactataaaattactagaagatatgaggtgtcttgaactatatataga |
364306 |
T |
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| Q |
197 |
ttttacttagtctat-ggaaaattaatgcatgta |
229 |
Q |
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| T |
364305 |
ctttacttagtctataaaaaaattaatgcatgta |
364272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 28055395 - 28055336
Alignment:
| Q |
143 |
gtattgaactataaaattactagaagatatgaggtgtcttgaactatatatagattttac |
202 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28055395 |
gtattgaactataaaatcactataagatatgaggtgtcttgaactatatatagattttac |
28055336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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