View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_64 (Length: 246)
Name: NF2898_low_64
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_64 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 6873138 - 6873368
Alignment:
| Q |
16 |
aaagtaagaagaaattaaagctgatagaatgtaccttgtcaaaggtaaagccttggttcccaccaggtgtatcttgtaattcaccggtcctgattatggt |
115 |
Q |
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| T |
6873138 |
aaagtaagaagaaattaaagctgatagactgtaccttgtcaaaggtaaagccttgcttcccaccaggtgtatcttgtaattcaccggtcctgattatggt |
6873237 |
T |
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| Q |
116 |
gtaaggaattcctgagctccttaatacagattcatcttgctcagccaatttctttgcattgtttttcatcatagattcaatgccagttttaccactataa |
215 |
Q |
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| T |
6873238 |
gtaaggaattcctgagctccttaatacagattcatcttgctcagccaatttctttgcattgtttttcatcatagattcaatgccagttttaccactataa |
6873337 |
T |
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| Q |
216 |
actgacaactgcaactttattaaaacagaac |
246 |
Q |
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| T |
6873338 |
actgacaactgcaactttattagaacagaac |
6873368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 6862491 - 6862699
Alignment:
| Q |
16 |
aaagtaagaagaaattaaagctgatagaatgtaccttgtcaaaggtaaagccttggttcccaccaggtgtatcttgtaattcaccggtcctgattatggt |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
6862491 |
aaagtaagaagaaattaaagctgatagattgtaccttgtcaaaggtaaagccttgcttcccaccaggtgtatcttgcaattcaccggt------------ |
6862578 |
T |
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| Q |
116 |
gtaaggaattcctgagctccttaatacagattcatcttgctcagccaatttctttgcattgtttttcatcatagattcaatgccagttttaccactataa |
215 |
Q |
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| T |
6862579 |
----------cctgagctccttaatacagattcatcttgctcagccaatttctttgcattgtttttcatcatagattcaatgccagttttaccactataa |
6862668 |
T |
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| Q |
216 |
actgacaactgcaactttattaaaacagaac |
246 |
Q |
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| T |
6862669 |
actgacaactgcaactttattaaaacagaac |
6862699 |
T |
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Back To:
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