View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_65 (Length: 241)
Name: NF2898_low_65
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5494042 - 5493830
Alignment:
| Q |
1 |
tgacatagtttatgattggtttggatgaatcactaggccaagttatgttaccagcaagagggagaaagtgttgaagtgtgagtgaaagtgagtgtttaag |
100 |
Q |
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| T |
5494042 |
tgacatagtttatgattggtttggatgaatcactaggccaagttatgttaccagcaagagggagaaagtgttgaagtgtgagtgaaagtgagtgtttaag |
5493943 |
T |
|
| Q |
101 |
atttggaagaagagtgtcatagaaaaaagttgttgagtttgtgagttcatagaagaagagaagttcaactggtggaaatcttaaccataaaagatcaaag |
200 |
Q |
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| T |
5493942 |
atttggaagaagagtgtcatagaaaaaagttgttgagtttgtgagttcatagaagaagagaagttcaactggtggaaatcttaaccataaaagatcaaag |
5493843 |
T |
|
| Q |
201 |
aaagtgagtggaa |
213 |
Q |
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||||||||||||| |
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| T |
5493842 |
aaagtgagtggaa |
5493830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 5524978 - 5524768
Alignment:
| Q |
3 |
acatagtttatgattggtttggatgaatcactaggccaagttatgttaccagcaagagggagaaagtgttgaagtgtgagtgaaagtgagtgtttaagat |
102 |
Q |
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| T |
5524978 |
acatagtttatgattggtttggatgaatcactaggccaagttatgttaccaacaagagggagaaagtgttgaagtgtgagtgaaagtgagtgtttgagat |
5524879 |
T |
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| Q |
103 |
ttggaagaagagtgtcatagaaaaaagttgttgagtttgtgagttcatagaagaagagaagttcaactggtggaaatcttaaccataaaagatcaaagaa |
202 |
Q |
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| T |
5524878 |
ttggaagaagagtttcatagaaaaaagttgtcgagtttgtgagttcatagaagaagagacgttcaactggtggaaatcttaaccataaaagatcaaagaa |
5524779 |
T |
|
| Q |
203 |
agtgagtggaa |
213 |
Q |
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| T |
5524778 |
agtgagtggaa |
5524768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 5482152 - 5482362
Alignment:
| Q |
3 |
acatagtttatgattggtttggatgaatcactaggccaagttatgttaccagcaagagggagaaagtgttgaagtgtgagtgaaagtgagtgtttaagat |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5482152 |
acatagtttatgattggtttggatgaatcactaggccaaattatgttaccagcaagagggagaaagtgttgaagtgtgagtgaaagtgagtgtttgagat |
5482251 |
T |
|
| Q |
103 |
ttggaagaagagtgtcatagaaaaaagttgttgagtttgtgagttcatagaagaagagaagttcaactggtggaaatcttaaccataaaagatcaaagaa |
202 |
Q |
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||||||||||||| |||||||||||||| | ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
5482252 |
ttggaagaagagtttcatagaaaaaagtgggtgagtttgtgaattcatagaagaaaagacgttcaactggtggaaatcttaaccatagaagatcaaagaa |
5482351 |
T |
|
| Q |
203 |
agtgagtggaa |
213 |
Q |
| |
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|||||||||| |
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| T |
5482352 |
tgtgagtggaa |
5482362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 4995466 - 4995613
Alignment:
| Q |
45 |
atgttaccagcaagagggagaaagtgttgaagtgtgagtgaaagtgagtgtttaagatttggaagaagagtgtcatagaaaaaagttgttga---gtttg |
141 |
Q |
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||||||||| ||||| |||| |||||||| ||||||||| ||| |||||||| ||||||||||||| | ||| ||||| |||| ||||| |||| |
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| T |
4995466 |
atgttaccaacaagaaggaggaagtgttggagtgtgagttcaagagagtgtttgagatttggaagaattgaatcaaagaaagaagtggttgatacatttg |
4995565 |
T |
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| Q |
142 |
tgagttcatagaagaagagaagttcaactggtggaaatcttaaccata |
189 |
Q |
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||||||||||||||||||| ||||||||||||| | ||||| ||||| |
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| T |
4995566 |
ggagttcatagaagaagagacgttcaactggtgggagtcttacccata |
4995613 |
T |
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