View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_low_66 (Length: 238)

Name: NF2898_low_66
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_low_66
NF2898_low_66
[»] chr4 (2 HSPs)
chr4 (17-238)||(44145444-44145665)
chr4 (17-238)||(44156307-44156528)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 44145444 - 44145665
Alignment:
Q  17 aaattcgtcacactattaagtacagtggctctccacacttccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||| ||  ||||||||| |||| ||||||    
T  44145444 aaattcgtcacactattaagtacagtggctctccacacttccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgt 44145543  T
Q  117 ctctcaagtgaagagaaggtatgtgcatcaagagtagtttccatcatattttcaatgctaacaaaccaaaatgaaatgggaatgcttttaatttgttgaa 216  Q
    |||||| | ||||||| |||||| ||||||||||||||||||||||| ||| |||||| |||| |||| ||||||||||||||| || ||||||||||||    
T  44145544 ctctcaggagaagagatggtatgggcatcaagagtagtttccatcatgtttccaatgccaacataccataatgaaatgggaatgtttctaatttgttgaa 44145643  T
Q  217 cttcaaagggattaaagatgct 238  Q
    ||||||||||||||||||||||    
T  44145644 cttcaaagggattaaagatgct 44145665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 44156528 - 44156307
Alignment:
Q  17 aaattcgtcacactattaagtacagtggctctccacacttccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||| ||  ||||||||| |||| ||||||    
T  44156528 aaattcgtcacactattaagtacagtggctctccacacttccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgt 44156429  T
Q  117 ctctcaagtgaagagaaggtatgtgcatcaagagtagtttccatcatattttcaatgctaacaaaccaaaatgaaatgggaatgcttttaatttgttgaa 216  Q
    |||||| | ||||||| |||||| ||||||||||||||||||||||| ||| |||||| |||| |||| ||||||||||||||| || ||||||||||||    
T  44156428 ctctcaggagaagagatggtatgggcatcaagagtagtttccatcatgtttccaatgccaacataccataatgaaatgggaatgtttctaatttgttgaa 44156329  T
Q  217 cttcaaagggattaaagatgct 238  Q
    ||||||||||||||||||||||    
T  44156328 cttcaaagggattaaagatgct 44156307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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