View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_low_72 (Length: 228)

Name: NF2898_low_72
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_low_72
NF2898_low_72
[»] chr1 (40 HSPs)
chr1 (18-213)||(37726802-37726995)
chr1 (156-211)||(5806571-5806626)
chr1 (156-211)||(6911207-6911262)
chr1 (156-211)||(36361505-36361560)
chr1 (156-211)||(46666430-46666485)
chr1 (156-211)||(47031581-47031636)
chr1 (156-209)||(9115561-9115614)
chr1 (156-209)||(20260381-20260434)
chr1 (158-211)||(50191061-50191114)
chr1 (156-208)||(39329347-39329399)
chr1 (156-207)||(2430223-2430274)
chr1 (156-211)||(32824643-32824698)
chr1 (156-210)||(8331737-8331791)
chr1 (156-210)||(25473978-25474032)
chr1 (156-206)||(51445374-51445424)
chr1 (156-210)||(52630496-52630550)
chr1 (158-211)||(2632575-2632628)
chr1 (158-211)||(29091394-29091447)
chr1 (156-209)||(38964974-38965027)
chr1 (156-209)||(39930181-39930234)
chr1 (156-203)||(13653581-13653628)
chr1 (156-210)||(12190472-12190526)
chr1 (156-210)||(14788446-14788500)
chr1 (156-209)||(25789487-25789540)
chr1 (159-207)||(9832168-9832216)
chr1 (156-208)||(37436914-37436966)
chr1 (157-208)||(1597638-1597689)
chr1 (156-210)||(46960351-46960405)
chr1 (158-207)||(48916319-48916368)
chr1 (160-205)||(49824022-49824067)
chr1 (54-113)||(19923604-19923664)
chr1 (156-208)||(32202608-32202660)
chr1 (156-211)||(5518798-5518853)
chr1 (156-211)||(45771814-45771869)
chr1 (120-159)||(46960454-46960493)
chr1 (156-195)||(52699760-52699799)
chr1 (161-210)||(17475609-17475658)
chr1 (158-211)||(24116631-24116684)
chr1 (162-211)||(38519361-38519410)
chr1 (41-155)||(52699595-52699708)
[»] chr8 (27 HSPs)
chr8 (156-211)||(32661229-32661284)
chr8 (156-210)||(12710367-12710421)
chr8 (156-210)||(35818719-35818773)
chr8 (156-210)||(37392841-37392895)
chr8 (156-210)||(38133033-38133087)
chr8 (156-205)||(10896511-10896560)
chr8 (157-210)||(26061866-26061919)
chr8 (156-209)||(38363804-38363857)
chr8 (156-211)||(7930960-7931015)
chr8 (156-207)||(42755592-42755643)
chr8 (157-211)||(3049730-3049784)
chr8 (156-210)||(25837633-25837687)
chr8 (157-211)||(26602233-26602287)
chr8 (157-210)||(43872261-43872314)
chr8 (156-208)||(18297836-18297888)
chr8 (157-208)||(37982083-37982134)
chr8 (156-210)||(16313802-16313856)
chr8 (162-208)||(18726921-18726967)
chr8 (157-208)||(12649859-12649910)
chr8 (156-211)||(16219236-16219291)
chr8 (156-211)||(25899380-25899435)
chr8 (156-198)||(1554650-1554692)
chr8 (162-208)||(33444923-33444969)
chr8 (156-210)||(35394080-35394134)
chr8 (156-210)||(40197348-40197402)
chr8 (168-209)||(41228976-41229017)
chr8 (158-210)||(33533689-33533741)
[»] chr4 (37 HSPs)
chr4 (156-210)||(27555153-27555207)
chr4 (156-211)||(13230284-13230339)
chr4 (156-211)||(45748090-45748145)
chr4 (156-211)||(48873746-48873801)
chr4 (156-211)||(48879050-48879105)
chr4 (156-210)||(41859341-41859395)
chr4 (156-210)||(47670088-47670142)
chr4 (156-210)||(55968295-55968349)
chr4 (156-209)||(36860051-36860104)
chr4 (158-211)||(51968504-51968557)
chr4 (156-211)||(6280216-6280271)
chr4 (156-211)||(39730588-39730643)
chr4 (156-210)||(18405528-18405582)
chr4 (157-211)||(23686512-23686566)
chr4 (156-210)||(43722990-43723044)
chr4 (156-210)||(45595994-45596048)
chr4 (157-210)||(25932167-25932220)
chr4 (156-211)||(25916307-25916363)
chr4 (156-208)||(27763194-27763246)
chr4 (156-211)||(39835602-39835657)
chr4 (156-203)||(48519186-48519233)
chr4 (162-208)||(27942465-27942511)
chr4 (156-210)||(42773674-42773728)
chr4 (156-209)||(31938164-31938217)
chr4 (156-208)||(40435628-40435680)
chr4 (156-208)||(41744516-41744568)
chr4 (156-211)||(8321970-8322025)
chr4 (156-211)||(35999411-35999466)
chr4 (156-210)||(935852-935906)
chr4 (156-209)||(7258691-7258744)
chr4 (157-210)||(18405129-18405182)
chr4 (157-202)||(50673200-50673245)
chr4 (156-207)||(18931482-18931533)
chr4 (156-202)||(34238249-34238295)
chr4 (162-210)||(12276210-12276259)
chr4 (158-211)||(52469422-52469475)
chr4 (161-209)||(30790275-30790323)
[»] chr7 (32 HSPs)
chr7 (156-209)||(48160868-48160921)
chr7 (156-213)||(48341083-48341140)
chr7 (156-210)||(11329715-11329769)
chr7 (156-210)||(28904481-28904535)
chr7 (156-210)||(33378556-33378610)
chr7 (156-209)||(27214150-27214203)
chr7 (156-209)||(35488484-35488537)
chr7 (158-210)||(16916182-16916234)
chr7 (156-208)||(34930762-34930814)
chr7 (156-211)||(44565766-44565821)
chr7 (156-210)||(43948967-43949021)
chr7 (156-210)||(45265343-45265397)
chr7 (157-210)||(9947287-9947340)
chr7 (156-209)||(45448665-45448718)
chr7 (158-206)||(27248019-27248067)
chr7 (156-210)||(17276454-17276508)
chr7 (156-210)||(25924932-25924986)
chr7 (31-155)||(5543250-5543374)
chr7 (167-212)||(40212624-40212669)
chr7 (156-204)||(18823890-18823938)
chr7 (156-211)||(38396660-38396715)
chr7 (156-209)||(6656765-6656819)
chr7 (156-205)||(38543920-38543970)
chr7 (156-206)||(45045352-45045402)
chr7 (156-210)||(48313844-48313898)
chr7 (156-208)||(27419519-27419571)
chr7 (158-205)||(44819981-44820028)
chr7 (156-206)||(30686286-30686336)
chr7 (83-157)||(30871039-30871112)
chr7 (156-206)||(37534397-37534447)
chr7 (157-210)||(45722881-45722934)
chr7 (95-159)||(43446065-43446129)
[»] chr6 (12 HSPs)
chr6 (156-211)||(8029024-8029079)
chr6 (156-211)||(10246411-10246466)
chr6 (156-213)||(1316738-1316795)
chr6 (156-211)||(2657421-2657476)
chr6 (156-211)||(7053873-7053928)
chr6 (156-210)||(18897643-18897697)
chr6 (156-208)||(11570079-11570131)
chr6 (156-207)||(14170740-14170791)
chr6 (157-210)||(6706048-6706101)
chr6 (156-208)||(9762335-9762387)
chr6 (156-208)||(16968649-16968701)
chr6 (156-185)||(7344789-7344818)
[»] chr5 (27 HSPs)
chr5 (156-211)||(4765855-4765910)
chr5 (156-211)||(18411930-18411985)
chr5 (156-211)||(29543310-29543365)
chr5 (156-210)||(6091437-6091491)
chr5 (156-206)||(8646685-8646735)
chr5 (156-210)||(22936207-22936261)
chr5 (156-208)||(556001-556053)
chr5 (156-207)||(11855950-11856001)
chr5 (156-211)||(14207116-14207171)
chr5 (156-207)||(27481082-27481133)
chr5 (156-206)||(19065800-19065850)
chr5 (156-210)||(32535659-32535713)
chr5 (156-204)||(16720981-16721029)
chr5 (156-211)||(8406615-8406670)
chr5 (156-211)||(12970825-12970880)
chr5 (157-211)||(28429449-28429503)
chr5 (156-210)||(28602278-28602332)
chr5 (156-208)||(36703506-36703558)
chr5 (157-208)||(40276536-40276587)
chr5 (162-207)||(42012485-42012530)
chr5 (162-211)||(43347195-43347244)
chr5 (156-212)||(20962280-20962336)
chr5 (156-211)||(26637316-26637371)
chr5 (157-210)||(6930364-6930417)
chr5 (161-206)||(31583359-31583404)
chr5 (40-155)||(35348652-35348766)
chr5 (161-206)||(36978433-36978478)
[»] chr3 (32 HSPs)
chr3 (156-211)||(26848743-26848798)
chr3 (156-211)||(33218208-33218263)
chr3 (156-210)||(11239415-11239469)
chr3 (157-210)||(40907988-40908041)
chr3 (156-208)||(20414760-20414812)
chr3 (158-210)||(48340054-48340106)
chr3 (156-211)||(8476603-8476658)
chr3 (156-207)||(43132451-43132502)
chr3 (156-211)||(44952029-44952084)
chr3 (157-211)||(6231797-6231851)
chr3 (157-211)||(24574288-24574342)
chr3 (54-159)||(40584435-40584541)
chr3 (156-210)||(46359674-46359728)
chr3 (156-206)||(47115152-47115202)
chr3 (156-209)||(28770504-28770557)
chr3 (156-208)||(1098923-1098975)
chr3 (156-207)||(43719220-43719271)
chr3 (158-208)||(29512324-29512374)
chr3 (156-209)||(9320744-9320797)
chr3 (158-210)||(10823014-10823066)
chr3 (156-207)||(24783934-24783985)
chr3 (156-210)||(6832217-6832271)
chr3 (156-210)||(20297515-20297569)
chr3 (156-206)||(31611280-31611330)
chr3 (157-210)||(28693727-28693780)
chr3 (161-209)||(27822994-27823042)
chr3 (161-208)||(31436222-31436269)
chr3 (156-206)||(6927817-6927867)
chr3 (159-205)||(45826064-45826110)
chr3 (157-211)||(53166020-53166074)
chr3 (158-207)||(40584336-40584385)
chr3 (156-204)||(28124731-28124779)
[»] chr2 (38 HSPs)
chr2 (156-211)||(346640-346695)
chr2 (156-211)||(6171512-6171567)
chr2 (156-211)||(23943884-23943939)
chr2 (156-211)||(37533674-37533729)
chr2 (156-213)||(41729425-41729482)
chr2 (156-211)||(14777793-14777848)
chr2 (156-207)||(37233155-37233206)
chr2 (156-211)||(40569739-40569794)
chr2 (157-211)||(11071326-11071380)
chr2 (156-210)||(37192244-37192298)
chr2 (156-210)||(42674956-42675010)
chr2 (156-209)||(20426777-20426830)
chr2 (156-208)||(17965707-17965759)
chr2 (156-207)||(28311991-28312042)
chr2 (156-211)||(40951154-40951209)
chr2 (156-202)||(2521381-2521427)
chr2 (156-210)||(4559281-4559335)
chr2 (156-206)||(21737703-21737753)
chr2 (156-206)||(26309993-26310043)
chr2 (156-206)||(45693915-45693965)
chr2 (156-209)||(5770405-5770458)
chr2 (156-208)||(638318-638370)
chr2 (156-207)||(13760692-13760743)
chr2 (156-206)||(1623078-1623128)
chr2 (156-210)||(2050588-2050642)
chr2 (156-205)||(9734141-9734190)
chr2 (156-208)||(39819414-39819466)
chr2 (156-211)||(18713951-18714006)
chr2 (157-207)||(3902182-3902232)
chr2 (157-211)||(7007306-7007360)
chr2 (160-202)||(8868938-8868980)
chr2 (156-198)||(11763695-11763737)
chr2 (158-207)||(14832536-14832585)
chr2 (156-208)||(5003130-5003182)
chr2 (156-204)||(25724753-25724801)
chr2 (162-202)||(27358263-27358303)
chr2 (157-185)||(41750276-41750304)
chr2 (162-202)||(45408981-45409021)
[»] scaffold0006 (2 HSPs)
scaffold0006 (156-210)||(201648-201702)
scaffold0006 (156-203)||(143342-143389)
[»] scaffold0702 (2 HSPs)
scaffold0702 (156-210)||(3860-3914)
scaffold0702 (95-156)||(3747-3808)
[»] scaffold0662 (2 HSPs)
scaffold0662 (156-210)||(4188-4242)
scaffold0662 (98-156)||(4294-4352)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 37726995 - 37726802
Alignment:
Q  18 atataaaatgttcaatacaaatattttcccaaagaaaaaagggtgagagtaaagtttccatgagatgggaacaaatatatgtgtaattacctattaatct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  37726995 atataaaatgttcaatacaaatattttcccaaagaaaaaagggtgagagtaaagtttccatgagatgggaataaatat--gtgtaattacctattaatct 37726898  T
Q  118 tcctatttttaaggttcatgggaagattataatgttaaccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37726897 tcctatttttaaggttcatgggaagattataatgttaaccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatg 37726802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 5806571 - 5806626
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5806571 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 5806626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 6911262 - 6911207
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  6911262 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 6911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 36361560 - 36361505
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  36361560 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 36361505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 46666485 - 46666430
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  46666485 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 46666430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 47031636 - 47031581
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47031636 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 47031581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 9115614 - 9115561
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  9115614 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 9115561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 20260381 - 20260434
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20260381 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 20260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 50191061 - 50191114
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  50191061 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 50191114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 39329399 - 39329347
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  39329399 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 39329347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 2430274 - 2430223
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  2430274 ccaaggaacgttattcctaggaataaatttagtaaacttgaaacaaacacac 2430223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 32824698 - 32824643
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||    
T  32824698 ccaaggaatgttattcctaggaataaatttcgtaaatttgaaacaaacacacccta 32824643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 8331791 - 8331737
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  8331791 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 8331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 25474032 - 25473978
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  25474032 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 25473978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 51445374 - 51445424
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  51445374 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 51445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 52630550 - 52630496
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  52630550 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 52630496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 2632628 - 2632575
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  2632628 aaggaatgttattcctagaaataaatttagtaaacttgaaacaaatacacccta 2632575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 29091447 - 29091394
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  29091447 aaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 29091394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 38964974 - 38965027
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  38964974 ccaaggaatgttattcctaggaataaatttggtaaacttaaaacaaacacaccc 38965027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 39930234 - 39930181
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  39930234 ccaaagaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 39930181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 13653628 - 13653581
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaac 203  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  13653628 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaac 13653581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 12190472 - 12190526
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||| |||||||||||||  | |||||||||||||||||||||    
T  12190472 ccaaggaatgttattcttaggaataaatttgataaacttgaaacaaacacaccct 12190526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 14788500 - 14788446
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  14788500 ccaaggaatgttattcctaagaataaatttggtaaacttaaaacaaacacaccct 14788446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 25789540 - 25789487
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  25789540 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccc 25789487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 9832168 - 9832216
Alignment:
Q  159 aggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||    
T  9832168 aggaatgttattcctaggaataaatttgataaacttgaaacaaacacac 9832216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 37436914 - 37436966
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||| || |||||||||| || |||||||||||||||||||    
T  37436914 ccaaggaatgttattcttaagaataaatttggtaaacttgaaacaaacacacc 37436966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 1597638 - 1597689
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    ||||||||||||||||||  ||||||||| || |||||||||||||||||||    
T  1597638 caaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 1597689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 46960405 - 46960351
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||| |||||||||||||||||||||||||  | || ||||||||||||||||||    
T  46960405 ccaaagaatgttattcctaggaataaatttgataaatttgaaacaaacacaccct 46960351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 48916319 - 48916368
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    ||||||||||||||||| ||||||||||  | ||||||||||||||||||    
T  48916319 aaggaatgttattcctaagaataaatttgataaacttgaaacaaacacac 48916368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 49824022 - 49824067
Alignment:
Q  160 ggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 205  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||    
T  49824022 ggaatgttattcctaggaataaatttgataaacttgaaacaaacac 49824067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 19923604 - 19923664
Alignment:
Q  54 aaaagggtgagagtaaagtttccatga-gatgggaacaaatatatgtgtaattacctatta 113  Q
    |||| |||||||||||||||| ||||| ||| |||||||||  ||||||||||||||||||    
T  19923604 aaaatggtgagagtaaagttttcatgaagattggaacaaattcatgtgtaattacctatta 19923664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 32202608 - 32202660
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||  |||||||||  | |||||||||||||||||||    
T  32202608 ccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacacc 32202660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 5518798 - 5518853
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||| | |||||||||| || ||||| ||||||||| ||||||    
T  5518798 ccaaggaatgttattccaatgaataaatttggtaaacttcaaacaaacagacccta 5518853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 45771869 - 45771814
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||| || ||||||| | ||||||||||| || ||||||||||||||||||||||    
T  45771869 ccaagaaaggttattcatgggaataaatttggtaaacttgaaacaaacacacccta 45771814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 46960493 - 46960454
Alignment:
Q  120 ctatttttaaggttcatgggaagattataatgttaaccaa 159  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  46960493 ctatttttaaggttcattggaatattataatgttaaccaa 46960454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 52699760 - 52699799
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttg 195  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  52699760 ccaaggaatgttattcctaggaataaatttggtaaacttg 52699799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 17475609 - 17475658
Alignment:
Q  161 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||| |||||||||||||  | |||||||||| ||||||||||    
T  17475609 gaatgttattcttaggaataaatttgataaacttgaaacgaacacaccct 17475658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 24116631 - 24116684
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||| || ||||||||||  | ||||| ||||||||||||||||    
T  24116631 aaggaatgttattcttaagaataaatttgttaaacttaaaacaaacacacccta 24116684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 38519361 - 38519410
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||| |||||||||| || || |||||||||||||| ||||    
T  38519361 aatgttattcctacgaataaatttggtaaatttgaaacaaacacaaccta 38519410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 52699595 - 52699708
Alignment:
Q  41 ttttcccaaagaaaaaagggtgagagtaaagtttccatg-agatgggaacaaatatatgtgtaattacctattaatcttcctatttttaaggttcatggg 139  Q
    |||||||||||||||  ||||| || ||||||| ||||| ||||||||| ||||  ||| |||||| |||||||   |||||||||| | |||||   ||    
T  52699595 ttttcccaaagaaaa--gggtgggaataaagttcccatggagatgggaataaattcatgagtaatttcctattataattcctattttcatggttcccagg 52699692  T
Q  140 aagattataatgttaa 155  Q
    || |||||||||||||    
T  52699693 aatattataatgttaa 52699708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 32661229 - 32661284
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32661229 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacacacccta 32661284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 12710421 - 12710367
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  12710421 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 12710367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 35818719 - 35818773
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  35818719 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 35818773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 37392841 - 37392895
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  37392841 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 37392895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 38133033 - 38133087
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  38133033 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 38133087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 10896511 - 10896560
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 205  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  10896511 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 10896560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 26061919 - 26061866
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  26061919 caaggaatgttattcctaggaataaatttggtaaacttaaaacaaacacaccct 26061866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 38363857 - 38363804
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  38363857 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccc 38363804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 7931015 - 7930960
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  7931015 ccaaagaatgttattcctagaaataaatttggtaaacttgaaacaaacacacccta 7930960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 42755643 - 42755592
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  42755643 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacac 42755592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 3049784 - 3049730
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||| ||||||||||  | ||||||||||||||||||||||    
T  3049784 caaggaatgttattcctatgaataaatttgataaacttgaaacaaacacacccta 3049730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 25837687 - 25837633
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||    
T  25837687 ccaaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacaccct 25837633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 26602233 - 26602287
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||| |||| ||||||||| || ||||||||||||||||||||||    
T  26602233 caaggaatgttatttctagcaataaatttggtaaacttgaaacaaacacacccta 26602287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 43872261 - 43872314
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  43872261 caaggaatgttattcctagaaataaatttggcaaacttgaaacaaacacaccct 43872314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 18297888 - 18297836
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||| |||||||||  | |||||||||||||||||||    
T  18297888 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacacc 18297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 37982083 - 37982134
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    ||||||||||||||||||  ||||||||| || |||||||||||||||||||    
T  37982083 caaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 37982134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 16313802 - 16313856
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||  |||||||||  | |||||||||||||||||||||    
T  16313802 ccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccct 16313856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18726921 - 18726967
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||    
T  18726921 aatgttattcctagaaataaatttggtaaacttgaaacaaacacacc 18726967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 12649910 - 12649859
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||| |||||||| ||| ||||||||| || |||||||||||||||||||    
T  12649910 caaggattgttattcgtagaaataaatttggtaaacttgaaacaaacacacc 12649859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 16219236 - 16219291
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||| ||||||||||||||||||||   | ||||| ||||||||||||||||    
T  16219236 ccaaggaacgttattcctaggaataaattggataaacttaaaacaaacacacccta 16219291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 25899435 - 25899380
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||  |||||||||  |  |||||||||||||||||||||    
T  25899435 ccaaggaatgttattcctaaaaataaatttgttacacttgaaacaaacacacccta 25899380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 1554650 - 1554692
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaa 198  Q
    ||||||||||||||||||| |||||||||| || |||||||||    
T  1554650 ccaaggaatgttattcctaagaataaatttggtaaacttgaaa 1554692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 33444923 - 33444969
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||| || ||||||||| ||| |||||||||||||||||||    
T  33444923 aatgttattcttatgaataaattcagtaaacttgaaacaaacacacc 33444969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 35394134 - 35394080
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||| |||||||||| ||| ||||||||||  | |||||||||||||||||||||    
T  35394134 ccaaagaatgttattactaagaataaatttgataaacttgaaacaaacacaccct 35394080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 40197348 - 40197402
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||| |||| |||||||||||||||||||| || |||||||| |||||| |||||    
T  40197348 ccaaagaatattattcctaggaataaatttggtaaacttgaagcaaacaaaccct 40197402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 41228976 - 41229017
Alignment:
Q  168 attcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||| ||||||||||| || ||||||||||||||||||||    
T  41228976 attccttggaataaatttggtaaacttgaaacaaacacaccc 41229017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 33533689 - 33533741
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||  |||||||||||||||||||    |||||||||||||||||||||    
T  33533689 aaggaataatattcctaggaataaatttgacaaacttgaaacaaacacaccct 33533741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 27555207 - 27555153
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27555207 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacacaccct 27555153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 13230284 - 13230339
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  13230284 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 13230339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 45748090 - 45748145
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  45748090 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 45748145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 48873801 - 48873746
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  48873801 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 48873746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 48879105 - 48879050
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  48879105 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 48879050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 41859341 - 41859395
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  41859341 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 41859395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 47670142 - 47670088
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  47670142 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 47670088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 55968295 - 55968349
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  55968295 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 55968349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 36860051 - 36860104
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  36860051 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 36860104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 51968557 - 51968504
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  51968557 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 51968504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 6280216 - 6280271
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  6280216 ccaaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacacccta 6280271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 39730588 - 39730643
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  39730588 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 39730643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 18405528 - 18405582
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  18405528 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 18405582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 23686566 - 23686512
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  23686566 caaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 23686512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 43723044 - 43722990
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  43723044 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 43722990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 45596048 - 45595994
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  45596048 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 45595994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 25932220 - 25932167
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  25932220 caaggaatgttattcctaggaataaatttgggaaacttgaaacaaacacaccct 25932167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 25916307 - 25916363
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaactt-gaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  25916307 ccaaggaatgttattcctaggaataaatttggtaaacttagaaacaaacacacccta 25916363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 27763194 - 27763246
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  27763194 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacc 27763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 39835602 - 39835657
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||    
T  39835602 ccaaggaatgttattcatagaaataaatttggtaaacttgaaacaaacacacccta 39835657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 48519186 - 48519233
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaac 203  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  48519186 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaac 48519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 27942511 - 27942465
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||| || |||||||||||||||||||    
T  27942511 aatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 27942465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 42773728 - 42773674
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||| ||||    
T  42773728 ccaaggaatgttatttctaggaataaatttggtaaacttgaaacaaacacgccct 42773674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 31938164 - 31938217
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    ||||||||||||||||||| ||||||||||  | ||||||||||||||||||||    
T  31938164 ccaaggaatgttattcctatgaataaatttgataaacttgaaacaaacacaccc 31938217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 40435680 - 40435628
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||    
T  40435680 ccaaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 40435628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 41744516 - 41744568
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||| ||||||||||||||| ||||||||| || |||||||||||||||||||    
T  41744516 ccaatgaatgttattcctagaaataaatttggtaaacttgaaacaaacacacc 41744568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 8322025 - 8321970
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||| ||||||||||||||  ||||||||| || ||||||||||||||||||||||    
T  8322025 ccaaagaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacccta 8321970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 35999466 - 35999411
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||| || |||||||||| || ||||||||||||||| ||||||    
T  35999466 ccaaggaatgttattcttaagaataaatttggtaaacttgaaacaaacaaacccta 35999411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 935906 - 935852
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||| |||||||||| || |||||||||| || |||||||||||||||||||||    
T  935906 ccaagaaatgttattcttaagaataaatttggtaaacttgaaacaaacacaccct 935852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 7258744 - 7258691
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    ||||||||||||||||||  ||||||||||  | ||||||||||||||||||||    
T  7258744 ccaaggaatgttattcctgagaataaatttgataaacttgaaacaaacacaccc 7258691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 18405182 - 18405129
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||| |||||||||| |  ||||| |||||||||||||||    
T  18405182 caaggaatgttattcctaagaataaatttggcaaacttaaaacaaacacaccct 18405129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 50673200 - 50673245
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaa 202  Q
    |||||||||||||||||||||||||||||  | |||||||||||||    
T  50673200 caaggaatgttattcctaggaataaatttgataaacttgaaacaaa 50673245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 18931533 - 18931482
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    ||||||||||||||||||| ||||||||||  | ||||| ||||||||||||    
T  18931533 ccaaggaatgttattcctaagaataaatttgataaacttaaaacaaacacac 18931482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 34238249 - 34238295
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaa 202  Q
    ||||||||||||||||||| ||||||||||  | |||||||||||||    
T  34238249 ccaaggaatgttattcctatgaataaatttgataaacttgaaacaaa 34238295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 12276210 - 12276259
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaa-cacaccct 210  Q
    |||||||||||||  |||||||||||| ||||||||||||| ||||||||    
T  12276210 aatgttattcctataaataaatttagtaaacttgaaacaaatcacaccct 12276259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 52469475 - 52469422
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||| ||||||||||  | ||||| ||||||||||| ||||    
T  52469475 aaggaatgttattcctaagaataaatttgattaacttaaaacaaacacatccta 52469422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 30790323 - 30790275
Alignment:
Q  161 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||| |||||| |||||||||  | ||||||||||||||||||||    
T  30790323 gaatgttactcctagaaataaatttgctaaacttgaaacaaacacaccc 30790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 48160868 - 48160921
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48160868 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacacaccc 48160921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 48341140 - 48341083
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatg 213  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  48341140 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctatg 48341083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 11329769 - 11329715
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  11329769 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 11329715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 28904481 - 28904535
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  28904481 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 28904535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 33378610 - 33378556
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  33378610 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 33378556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 27214150 - 27214203
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  27214150 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 27214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 35488484 - 35488537
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  35488484 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 35488537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 16916182 - 16916234
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  16916182 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 16916234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 34930762 - 34930814
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34930762 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 34930814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 44565821 - 44565766
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  44565821 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 44565766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 43949021 - 43948967
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  43949021 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaatacaccct 43948967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 45265343 - 45265397
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  45265343 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 45265397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 9947287 - 9947340
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  9947287 caaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 9947340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 45448718 - 45448665
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  45448718 ccaaggaatgttattcataggaataaatttggtaaacttgaaacaaacacaccc 45448665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 27248067 - 27248019
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||    
T  27248067 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 27248019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 17276454 - 17276508
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||| ||||||||| || || ||||||||||||||||||    
T  17276454 ccaaggaatgttattcctagaaataaattttgtaaaattgaaacaaacacaccct 17276508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 25924932 - 25924986
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||    
T  25924932 ccaaggaatgttattcttaggaataaatttggtaaacatgaaacaaacacaccct 25924986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 5543250 - 5543374
Alignment:
Q  31 aatacaaatattttcccaaagaaaaaagggtgagagtaaagtttccatga-gatgggaacaaatatatgtgtaattacctattaatcttcctatttttaa 129  Q
    |||| |||| ||||||||||||||||  | || || ||||||| |||||| |||||||||||||  ||||||||||||||||||   | | ||||||||     
T  5543250 aatagaaattttttcccaaagaaaaatag-tgggaataaagttcccatgaagatgggaacaaattcatgtgtaattacctattataatccatatttttat 5543348  T
Q  130 ggttcatgggaagattataatgttaa 155  Q
    |||||  ||||| |||||||||||||    
T  5543349 ggttcccgggaacattataatgttaa 5543374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 40212669 - 40212624
Alignment:
Q  167 tattcctaggaataaatttagtgaacttgaaacaaacacaccctat 212  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  40212669 tattcctaggaataaatttggtaaacttgaaacaaacacaccctat 40212624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 18823938 - 18823890
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 204  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||||    
T  18823938 ccaaagaatgttattcctaggaataaatttggtaaacttgaaacaaaca 18823890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 38396660 - 38396715
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||| ||||| |||||||||||||||||||  | ||||||||||||||||||||||    
T  38396660 ccaatgaatgctattcctaggaataaatttgataaacttgaaacaaacacacccta 38396715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 6656765 - 6656819
Alignment:
Q  156 ccaaggaatgtt-attcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||    
T  6656765 ccaaggaatgtttattcctaagaataaatttagtaaacttgaaagaaacacaccc 6656819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 38543970 - 38543920
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaac-ttgaaacaaacac 205  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  38543970 ccaaggaatgttattcctaagaataaatttagtaaactttgaaacaaacac 38543920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 45045402 - 45045352
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||||||| ||||||||| |||||||||| || |||||||||||||||||    
T  45045402 ccaaggaatattattcctaagaataaatttggtaaacttgaaacaaacaca 45045352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 48313898 - 48313844
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||| |||||||||||||| |||||||||  | |||||||||||||||||||||    
T  48313898 ccaagaaatgttattcctagaaataaatttgataaacttgaaacaaacacaccct 48313844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 27419519 - 27419571
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    ||||| |||||||||||||  ||||||||| || |||||||||||||||||||    
T  27419519 ccaagaaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 27419571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 44820028 - 44819981
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 205  Q
    |||||||||||||||||  ||||||||| || ||||||||||||||||    
T  44820028 aaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacac 44819981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 30686286 - 30686336
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||||||||||||| |||||||||  | ||||| |||||||||||    
T  30686286 ccaaggaatgttattcctagaaataaatttgataaacttaaaacaaacaca 30686336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 30871112 - 30871039
Alignment:
Q  83 tgggaacaaatatatgtgtaattacctattaatcttcctatttttaaggttcatgggaagattataatgttaacc 157  Q
    |||||| |||| ||||||||| ||  ||||||||| | ||||||||||||||||  ||| |||||||||||||||    
T  30871112 tgggaataaatttatgtgtaactatatattaatctccttatttttaaggttcat-agaatattataatgttaacc 30871039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 37534397 - 37534447
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||||||||||||| |||| |||||||||  | |||||||||||||||||    
T  37534397 ccaaggaatgttatttctagaaataaatttgataaacttgaaacaaacaca 37534447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 45722934 - 45722881
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||  ||||||||| || ||||||||| ||| |||||||    
T  45722934 caaggaatgttattcctaaaaataaatttggtaaacttgaaataaagacaccct 45722881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 43446065 - 43446129
Alignment:
Q  95 tatgtgtaattacctattaatcttcctatttttaaggttcatgggaagattataatgttaaccaa 159  Q
    |||||||||||||||||||   ||||||| ||||| |||| |  ||| |||||||||||||||||    
T  43446065 tatgtgtaattacctattatatttcctatctttaatgttctttagaatattataatgttaaccaa 43446129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 8029079 - 8029024
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  8029079 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 8029024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 10246411 - 10246466
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  10246411 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 10246466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 1316795 - 1316738
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatg 213  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  1316795 ccaaagaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctatg 1316738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 2657476 - 2657421
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  2657476 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 2657421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 7053873 - 7053928
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  7053873 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 7053928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 18897697 - 18897643
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  18897697 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 18897643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 11570079 - 11570131
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| |||||    
T  11570079 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaagacacc 11570131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 14170791 - 14170740
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  14170791 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacac 14170740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 6706048 - 6706101
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| |||||| || || ||||||||||||||| |||||    
T  6706048 caaggaatgttattcctagaaataaaattggtaaacttgaaacaaacataccct 6706101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 9762335 - 9762387
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||  |||||| || || |||||||||||||||||||    
T  9762335 ccaaggaatgttattcctaataataaacttggtaaacttgaaacaaacacacc 9762387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 16968701 - 16968649
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||| ||||||||||||||| |||||||||  | |||||||||||||||||||    
T  16968701 ccaaagaatgttattcctagaaataaatttgataaacttgaaacaaacacacc 16968649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 7344789 - 7344818
Alignment:
Q  156 ccaaggaatgttattcctaggaataaattt 185  Q
    ||||||||||||||||||||||||||||||    
T  7344789 ccaaggaatgttattcctaggaataaattt 7344818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 4765855 - 4765910
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  4765855 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 4765910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 18411985 - 18411930
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  18411985 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 18411930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 29543310 - 29543365
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  29543310 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 29543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 6091491 - 6091437
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  6091491 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 6091437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 8646685 - 8646735
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8646685 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacaca 8646735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 22936207 - 22936261
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  22936207 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 22936261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 556001 - 556053
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  556001 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 556053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 11855950 - 11856001
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  11855950 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacac 11856001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 14207116 - 14207171
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  14207116 ccaatgaatgttattcctaggaataaattttgtaaacttgaaacaaacacacccta 14207171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 27481133 - 27481082
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  27481133 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacac 27481082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 19065800 - 19065850
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  19065800 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 19065850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 32535713 - 32535659
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  32535713 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 32535659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 16720981 - 16721029
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 204  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16720981 ccaatgaatgttattcctaggaataaatttagtaaacttgaaacaaaca 16721029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 8406670 - 8406615
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||||    
T  8406670 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacacccta 8406615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 12970825 - 12970880
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||||    
T  12970825 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacacccta 12970880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 28429503 - 28429449
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||| |||| ||||||||| || ||||||||||||||||||||||    
T  28429503 caaggaatgttatttctagaaataaatttggtaaacttgaaacaaacacacccta 28429449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 28602332 - 28602278
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||    
T  28602332 ccaaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacaccct 28602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 36703558 - 36703506
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    ||||||||||||||||||| |||||||||| || || ||||||||||||||||    
T  36703558 ccaaggaatgttattcctatgaataaatttggtaaatttgaaacaaacacacc 36703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 40276536 - 40276587
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||| | | ||||||||||||| |||||||||||||||||||    
T  40276536 caaggaatgttattaccaagaataaatttagtaaacttgaaacaaacacacc 40276587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 42012485 - 42012530
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||    
T  42012485 aatgttattcctaaaaataaatttagtaaacttgaaacaaacacac 42012530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 43347195 - 43347244
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||| |||||||||| |  ||||||||||||||||||||||    
T  43347195 aatgttattcctaagaataaatttcgaaaacttgaaacaaacacacccta 43347244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 20962336 - 20962280
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctat 212  Q
    ||||||||||||||||||| ||||||||||  | ||||| ||||||||||| |||||    
T  20962336 ccaaggaatgttattcctatgaataaatttgataaacttaaaacaaacacatcctat 20962280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 26637316 - 26637371
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||  |||||||||  | ||||||||| ||||||||||||    
T  26637316 ccaaggaatgttattcctaaaaataaatttgataaacttgaaataaacacacccta 26637371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 6930417 - 6930364
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||| || ||||||||||  | ||||| |||||||||||||||    
T  6930417 caaggaatgttattcatatgaataaatttgataaacttaaaacaaacacaccct 6930364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 31583359 - 31583404
Alignment:
Q  161 gaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||||||||| ||| |||||||||||| ||||| |||||||||||    
T  31583359 gaatgttattcgtagaaataaatttagtaaacttaaaacaaacaca 31583404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 35348652 - 35348766
Alignment:
Q  40 attttcccaaagaaaaaagggtgagagtaaagtttccatga-gatgggaacaaatatatgtgtaattacctattaatcttcctatttttaaggttcatgg 138  Q
    ||||||||||||||||  ||||| || ||||||| |||||| |||| ||| ||||  |  |||||||||||||||   ||| |||||||| |||||  ||    
T  35348652 attttcccaaagaaaa--gggtgggaataaagttcccatgaagatgagaataaattcacatgtaattacctattataattcatatttttatggttcccgg 35348749  T
Q  139 gaagattataatgttaa 155  Q
    ||| |||||||||||||    
T  35348750 gaatattataatgttaa 35348766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 36978433 - 36978478
Alignment:
Q  161 gaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||||||||||||  |||||||||| | |||||||||||||||||    
T  36978433 gaatgttattcctataaataaatttaataaacttgaaacaaacaca 36978478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 26848798 - 26848743
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  26848798 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 26848743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 33218208 - 33218263
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  33218208 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 33218263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 11239415 - 11239469
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  11239415 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 11239469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 40908041 - 40907988
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  40908041 caaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 40907988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 20414760 - 20414812
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  20414760 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 20414812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 48340054 - 48340106
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  48340054 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 48340106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 8476603 - 8476658
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  8476603 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacacccta 8476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 43132451 - 43132502
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  43132451 ccaaggaatgttattcctaagaataaatttagtaaacttgaaacaaacacac 43132502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 44952084 - 44952029
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  44952084 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 44952029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 6231797 - 6231851
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  6231797 caaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 6231851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 24574342 - 24574288
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  24574342 caaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacacccta 24574288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 40584541 - 40584435
Alignment:
Q  54 aaaagggtgagagtaaagtttccatg-agatgggaacaaatatatgtgtaattacctattaatcttcctatttttaaggttcatgggaagattataatgt 152  Q
    |||| |||| || ||||||| ||||| ||||||||| |||  |||||||||| ||||||||   |||||||||||||||||| | |||| ||||||||||    
T  40584541 aaaatggtgggaataaagttcccatggagatgggaataaaattatgtgtaatcacctattatatttcctatttttaaggttccttggaatattataatgt 40584442  T
Q  153 taaccaa 159  Q
    |||||||    
T  40584441 taaccaa 40584435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 46359728 - 46359674
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  46359728 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 46359674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 47115152 - 47115202
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  47115152 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 47115202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 28770504 - 28770557
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  28770504 ccaaggaatgttattcctaggaataaatttggtaaatttgaaacaaacacaccc 28770557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 1098975 - 1098923
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  1098975 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacc 1098923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 43719220 - 43719271
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  43719220 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacac 43719271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 29512374 - 29512324
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||||||| || || ||||||||||||||||    
T  29512374 aaggaatgttattcctaggaataaatttggtaaatttgaaacaaacacacc 29512324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 9320744 - 9320797
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    ||||||||||||||||||| ||||||||||  | ||||||||||||||||||||    
T  9320744 ccaaggaatgttattcctatgaataaatttcataaacttgaaacaaacacaccc 9320797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 10823014 - 10823066
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||| |||||||||  | |||||||||||||||||||||    
T  10823014 aaggaatgttattcctagaaataaatttgctaaacttgaaacaaacacaccct 10823066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 24783985 - 24783934
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||| || |||||||||| || ||||||||||||||||||    
T  24783985 ccaaggaatgttattcttatgaataaatttggtaaacttgaaacaaacacac 24783934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 6832217 - 6832271
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||| |||||||||| ||||||||||||| || || ||||||||||||||||||    
T  6832217 ccaagtaatgttattcttaggaataaatttggtaaatttgaaacaaacacaccct 6832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 20297569 - 20297515
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||| |||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  20297569 ccaaagaatgttattcctaagaataaatttggtaaacttaaaacaaacacaccct 20297515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 31611280 - 31611330
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||||||||| || |||||||||| || |||||||||||||||||    
T  31611280 ccaaggaatgttattcataagaataaatttggtaaacttgaaacaaacaca 31611330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 28693727 - 28693780
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||  ||||| ||||||||||||||||| || ||||||||||||||||||    
T  28693727 caaggaaaattatttctaggaataaatttagtaaatttgaaacaaacacaccct 28693780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 27823042 - 27822994
Alignment:
Q  161 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||||||    
T  27823042 gaatgttattcctaaaaataaatttggtaaacttgaaacaaacacaccc 27822994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 31436222 - 31436269
Alignment:
Q  161 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||| | |||||||||||| || |||||||||||||||||||    
T  31436222 gaatgttatttccaggaataaatttggtaaacttgaaacaaacacacc 31436269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 6927867 - 6927817
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||||||||||||| |||||||||  | ||||| |||||||||||    
T  6927867 ccaaggaatgttattcctagtaataaatttgataaacttaaaacaaacaca 6927817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 45826110 - 45826064
Alignment:
Q  159 aggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 205  Q
    ||||| ||||||||||||||||||| |||| |||| |||||||||||    
T  45826110 aggaaagttattcctaggaataaatctagtaaactggaaacaaacac 45826064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 53166020 - 53166074
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||| ||| ||||||||   | ||||||||||||||||||||||    
T  53166020 caaggaatgttattcttagaaataaattggataaacttgaaacaaacacacccta 53166074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 40584385 - 40584336
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||| |||||||||||||  |  |||||||||||||||||    
T  40584385 aaggaatgttattcttaggaataaatttgttacacttgaaacaaacacac 40584336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 28124731 - 28124779
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 204  Q
    ||||||||||||| |||||  ||||||||| || |||||||||||||||    
T  28124731 ccaaggaatgttaatcctaaaaataaatttggtaaacttgaaacaaaca 28124779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 346640 - 346695
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  346640 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 346695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 6171567 - 6171512
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  6171567 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 6171512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 23943939 - 23943884
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  23943939 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 23943884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 37533729 - 37533674
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  37533729 ccaaggaatgttattcctagaaataaatttagtaaacttgaaacaaacacacccta 37533674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 41729425 - 41729482
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatg 213  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  41729425 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccctatg 41729482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 14777793 - 14777848
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  14777793 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 14777848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 37233206 - 37233155
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  37233206 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacac 37233155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 40569794 - 40569739
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  40569794 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacacccta 40569739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 11071380 - 11071326
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  11071380 caaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacacccta 11071326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 37192298 - 37192244
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  37192298 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 37192244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 42674956 - 42675010
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  42674956 ccaagaaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 42675010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 20426777 - 20426830
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  20426777 ccaaggaatgttattcctaggaataaatttggtaaactttaaacaaacacaccc 20426830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 17965759 - 17965707
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  17965759 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacacc 17965707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 28311991 - 28312042
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  28311991 ccaaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacac 28312042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 40951154 - 40951209
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||||||||||||| || || |||||||||||| ||||||    
T  40951154 ccaaggaatgttattcctaggaataaatttggtaaatttgaaacaaacatacccta 40951209  T

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Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 2521427 - 2521381
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaa 202  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  2521427 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaa 2521381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 4559335 - 4559281
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||| ||| ||||||||| || |||||||||||||||||||||    
T  4559335 ccaaggaatgttattcttagaaataaatttggtaaacttgaaacaaacacaccct 4559281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 21737703 - 21737753
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  21737703 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacaca 21737753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 26310043 - 26309993
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26310043 ccaaggaatgctattcctaggaataaatttggtaaacttgaaacaaacaca 26309993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 45693965 - 45693915
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  45693965 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacaca 45693915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 5770405 - 5770458
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 209  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  5770405 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccc 5770458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 638370 - 638318
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||||||||||||| || ||||| || ||||||||||    
T  638370 ccaaggaatgttattcctaggaataaatttggtaaacttaaatcaaacacacc 638318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 13760743 - 13760692
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||||||||| ||||||||| |  ||||||||||||||||||    
T  13760743 ccaaggaatgttattcctagaaataaatttggcaaacttgaaacaaacacac 13760692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 1623128 - 1623078
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 206  Q
    ||||| ||||||||| ||||||||||||||||| || ||||||||||||||    
T  1623128 ccaagaaatgttattactaggaataaatttagtaaaattgaaacaaacaca 1623078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 2050642 - 2050588
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||  |||||||||  | |||||||||||||||||||||    
T  2050642 ccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccct 2050588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 9734141 - 9734190
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 205  Q
    |||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  9734141 ccaaggaatgttattcctagaaataaatttggtaaacttaaaacaaacac 9734190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 39819466 - 39819414
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||| |||||||||||||| |||||||||| || || ||||||||||||||||    
T  39819466 ccaaagaatgttattcctatgaataaatttggtaaatttgaaacaaacacacc 39819414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 18713951 - 18714006
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||||||||||||||||||  ||||||||| || | |||||| |||||||||||||    
T  18713951 ccaaggaatgttattcctataaataaatttggtaagcttgaatcaaacacacccta 18714006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 3902232 - 3902182
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    ||||||||||||||||||  ||||||| | || ||||||||||||||||||    
T  3902232 caaggaatgttattcctaaaaataaatatggtaaacttgaaacaaacacac 3902182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 7007360 - 7007306
Alignment:
Q  157 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 211  Q
    |||| |||||||||||||  ||||||||| || ||||| ||||||||||||||||    
T  7007360 caagaaatgttattcctaataataaatttggtaaacttaaaacaaacacacccta 7007306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 8868938 - 8868980
Alignment:
Q  160 ggaatgttattcctaggaataaatttagtgaacttgaaacaaa 202  Q
    |||| ||||||| |||||||||||||||| |||||||||||||    
T  8868938 ggaaagttattcgtaggaataaatttagtaaacttgaaacaaa 8868980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 11763695 - 11763737
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaa 198  Q
    ||||||||||||||||||| |||||||||| || |||||||||    
T  11763695 ccaaggaatgttattcctaagaataaatttggtaaacttgaaa 11763737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 14832585 - 14832536
Alignment:
Q  158 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 207  Q
    |||||||||||||| | | ||||||||| || ||||||||||||||||||    
T  14832585 aaggaatgttattcttggaaataaatttggtaaacttgaaacaaacacac 14832536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 5003130 - 5003182
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 208  Q
    |||||||||||||||||||  ||||||||| || || || |||||||||||||    
T  5003130 ccaaggaatgttattcctataaataaatttggtaaattttaaacaaacacacc 5003182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 25724801 - 25724753
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 204  Q
    |||||||| ||||||| | ||||||||| |||| |||||||||||||||    
T  25724801 ccaaggaaagttattcttgggaataaatctagtaaacttgaaacaaaca 25724753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 27358263 - 27358303
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaa 202  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  27358263 aatgttattcctaggaataaatttggtaaacttaaaacaaa 27358303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 41750304 - 41750276
Alignment:
Q  157 caaggaatgttattcctaggaataaattt 185  Q
    |||||||||||||||||||||||||||||    
T  41750304 caaggaatgttattcctaggaataaattt 41750276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 45409021 - 45408981
Alignment:
Q  162 aatgttattcctaggaataaatttagtgaacttgaaacaaa 202  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  45409021 aatgttattcctaggaataaatttggtaaacttaaaacaaa 45408981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 201702 - 201648
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  201702 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 201648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 143389 - 143342
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaac 203  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  143389 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaac 143342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 3860 - 3914
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  3860 ccaaggaatgttattcataggaataaatttggtgcacttgaaacaaacacaccct 3914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 3747 - 3808
Alignment:
Q  95 tatgtgtaattacctattaatcttcctatttttaaggttcatgggaagattataatgttaac 156  Q
    |||||||||||||||||||   | |||||||||||||||| | |||| ||||||||||||||    
T  3747 tatgtgtaattacctattatattccctatttttaaggttccttggaatattataatgttaac 3808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 4242 - 4188
Alignment:
Q  156 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 210  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  4242 ccaaggaatgttattcataggaataaatttggtgcacttgaaacaaacacaccct 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 4352 - 4294
Alignment:
Q  98 gtgtaattacctattaatcttcctatttttaaggttcatgggaagattataatgttaac 156  Q
    ||||||||||||||||   | |||||||||||||||| | |||| ||||||||||||||    
T  4352 gtgtaattacctattatattccctatttttaaggttccttggaatattataatgttaac 4294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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