View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_73 (Length: 227)
Name: NF2898_low_73
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_73 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25037811 - 25037586
Alignment:
| Q |
1 |
gtgtgctcgggcgcgtgtattgacatttatacaattgtatacgacacttatgtacaggctgcttcaccttggctatttgtttatccaagggggattcaag |
100 |
Q |
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| T |
25037811 |
gtgtgctcgggcgcgtgtattgacatttatacaattgtatacgacacttatgtacaggctgcttcaccttggctatttgtttatccaagggggattcaag |
25037712 |
T |
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| Q |
101 |
aactactgttgtacacaaagacaaagtataacaaccctgtgatttacataacagaaaatggtactactttaattaagttcatttgatttttcaatataca |
200 |
Q |
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| T |
25037711 |
aactactgttgtacacaaagacaaagtataacaaccctgtgatttacataaccgaaaatggtactactttaattaagttcatttgatttttcaatatata |
25037612 |
T |
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| Q |
201 |
ttttaatataaaattcaatatattgta |
227 |
Q |
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| T |
25037611 |
-tttaacataaaattcaatatattgta |
25037586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 25016497 - 25016374
Alignment:
| Q |
52 |
gtacaggctgcttcaccttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataa |
151 |
Q |
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| T |
25016497 |
gtacaggctgcttcaccttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataa |
25016398 |
T |
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| Q |
152 |
cagaaaatggtactactttaatta |
175 |
Q |
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| T |
25016397 |
cagaaaatggtaatactttaatta |
25016374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 4599183 - 4599088
Alignment:
| Q |
68 |
cttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataacagaaaatggta |
163 |
Q |
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| T |
4599183 |
cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggta |
4599088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 4623610 - 4623515
Alignment:
| Q |
68 |
cttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataacagaaaatggta |
163 |
Q |
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| T |
4623610 |
cttggttatatgtttgtccaaagggtattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggta |
4623515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 18805377 - 18805477
Alignment:
| Q |
69 |
ttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataacagaaaatggtactact |
168 |
Q |
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| T |
18805377 |
ttggctatatgtttatccaaaggggattcaagagctactgttgtacataaagaaaaagtataacaatcctgttatttacataacagaaaatggtaatact |
18805476 |
T |
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| Q |
169 |
t |
169 |
Q |
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| T |
18805477 |
t |
18805477 |
T |
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