View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2898_low_76 (Length: 223)
Name: NF2898_low_76
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_76 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 390652 - 390842
Alignment:
| Q |
23 |
tgcaaattcgaccttgactgtggcacctctagctttgtagctacagtaaggtgcgcctcataaagctccttcagcgaggtataagtaatatatgcatcaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
390652 |
tgcaaattcgaccttgactgtggcacctctagctttgtagctacagtaaggtgcgcctcataaagctccttcagcgaggtataagtaatatatgcatcaa |
390751 |
T |
|
| Q |
123 |
actcatccttgcacgccttcactgcaacaaccttcgaaacacctaaccaccggaccatcaactccactccacgctcctgtgacaccttctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
390752 |
actcatccttgcacgccttcactgcaacaaccttcgaaacacctaaacaccggaccatcaactccactccacgctcctgagacaccttctt |
390842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 16506923 - 16506807
Alignment:
| Q |
78 |
cctcataaagctccttcagcgaggtataagtaatatatgcatcaaactcatccttgcacgccttcactgcaacaaccttcgaaacacctaaccaccggac |
177 |
Q |
| |
|
|||||||||| | ||||| | | || ||||||||||| ||| ||||||| ||||||||| ||||||||||| || ||| |||||||||||||||| || |
|
|
| T |
16506923 |
cctcataaagttgcttcaaccaagtttaagtaatataagcaccaaactcgtccttgcactccttcactgcagcagcctcagaaacacctaaccacctcac |
16506824 |
T |
|
| Q |
178 |
catcaactccactccac |
194 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
16506823 |
catcaactctactccac |
16506807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 11868555 - 11868656
Alignment:
| Q |
41 |
tgtggcacctctagctttgtagctacagtaaggtgcgcctcataaagctccttcagcgaggtataagtaatatatgcatcaaactcatccttgcacgcct |
140 |
Q |
| |
|
|||| |||||| |||| | |||||||||| |||||| ||||||||||| ||||| | | ||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
11868555 |
tgtgacacctccagctgtctagctacagtcaggtgctcctcataaagccgcttcaatgcaggataagtaatatgagcaccatactcatccttgcacgcct |
11868654 |
T |
|
| Q |
141 |
tc |
142 |
Q |
| |
|
|| |
|
|
| T |
11868655 |
tc |
11868656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University