View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_low_80 (Length: 204)

Name: NF2898_low_80
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_low_80
NF2898_low_80
[»] chr3 (1 HSPs)
chr3 (30-187)||(49612972-49613129)
[»] chr6 (9 HSPs)
chr6 (33-160)||(2964048-2964175)
chr6 (33-151)||(2982432-2982550)
chr6 (86-151)||(2659403-2659468)
chr6 (95-142)||(2972622-2972669)
chr6 (31-151)||(2934163-2934277)
chr6 (31-151)||(2951506-2951620)
chr6 (31-151)||(2926724-2926838)
chr6 (30-150)||(2997798-2997912)
chr6 (31-151)||(3004181-3004295)
[»] chr7 (2 HSPs)
chr7 (51-187)||(20012172-20012305)
chr7 (99-151)||(3338807-3338859)
[»] scaffold0024 (1 HSPs)
scaffold0024 (31-151)||(35627-35741)
[»] chr5 (3 HSPs)
chr5 (137-187)||(1835002-1835052)
chr5 (137-187)||(40320473-40320523)
chr5 (137-187)||(41407044-41407094)
[»] chr4 (1 HSPs)
chr4 (137-187)||(24227921-24227971)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 49612972 - 49613129
Alignment:
Q  30 cagacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttactt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49612972 cagacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttactt 49613071  T
Q  130 caaagcttttctccaacgaacccagacaactctacacaccttcattcactgcatagat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613072 caaagcttttctccaacgaacccagacaactctacacaccttcattcactgcatagat 49613129  T

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Target: chr6 (Bit Score: 64; Significance: 3e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 2964048 - 2964175
Alignment:
Q  33 acgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttcaa 132  Q
    ||||||||||||||||  || ||||||| ||||| || |||||| |||||| ||||| |||  ||||||||||||| || || |||||||||||||||||    
T  2964048 acgcatacacccccaagttcgtttccatcggcccctttcaccacggtcacccccacccccagatccaaaacatggaacgacaaaaactcatttacttcaa 2964147  T
Q  133 agcttttctccaacgaacccagacaact 160  Q
    || |||||||||||||||| ||||||||    
T  2964148 agattttctccaacgaaccgagacaact 2964175  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 2982432 - 2982550
Alignment:
Q  33 acgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttcaa 132  Q
    |||||||||||||||| ||| ||||||||||||| || |||||| ||||||    || ||| |||||||||||||| || || || |||||| |||||||    
T  2982432 acgcatacacccccaatgtcgtttccattggcccctttcaccacggtcacctaggcctccatctccaaaacatggaacgtcagaagctcattcacttcaa 2982531  T
Q  133 agcttttctccaacgaacc 151  Q
    ||||||||| |||||||||    
T  2982532 agcttttcttcaacgaacc 2982550  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 2659468 - 2659403
Alignment:
Q  86 caccaccacctccaaaacatggagcgccacaaactcatttacttcaaagcttttctccaacgaacc 151  Q
    |||| ||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  2659468 cacccccagctccaaaacatggaacgtcacaaactcatttacttgaaagcttttctccaacgaacc 2659403  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 2972622 - 2972669
Alignment:
Q  95 ctccaaaacatggagcgccacaaactcatttacttcaaagcttttctc 142  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||    
T  2972622 ctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctc 2972669  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 2934163 - 2934277
Alignment:
Q  31 agacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttc 130  Q
    |||||||||||||||||  ||| ||||||||||||| || |||||| |||||| ||| |      |||||||||||||  | || |||||||||||||||    
T  2934163 agacgcatacacccccactgtcgtttccattggcccctttcaccacggtcacccccagc------tccaaaacatggaaagtcagaaactcatttacttc 2934256  T
Q  131 aaagcttttctccaacgaacc 151  Q
    || | |||||||||| |||||    
T  2934257 aaggattttctccaaagaacc 2934277  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 2951506 - 2951620
Alignment:
Q  31 agacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttc 130  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||  |||||| ||| |      |||||||||||||  | || |||||||||||||||    
T  2951506 agacgcatacacccccaaggtcgtttccattggcccctttcaccatggtcacccccagc------tccaaaacatggaaagtcagaaactcatttacttc 2951599  T
Q  131 aaagcttttctccaacgaacc 151  Q
    || | |||||||||| |||||    
T  2951600 aaggattttctccaaagaacc 2951620  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 2926724 - 2926838
Alignment:
Q  31 agacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttc 130  Q
    |||||||||||||||||| ||| |||| |||||||| || |||||| ||||     ||| ||| ||||||||||||||  | || |||||||||||||||    
T  2926724 agacgcatacacccccaaggtcgtttctattggcccctttcaccacggtca-----acc-ccagctccaaaacatggaaagtcagaaactcatttacttc 2926817  T
Q  131 aaagcttttctccaacgaacc 151  Q
    || | |||||||||| |||||    
T  2926818 aaggattttctccaaagaacc 2926838  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 2997912 - 2997798
Alignment:
Q  30 cagacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttactt 129  Q
    ||||||||||||||||||  ||| ||||||||||||| || |||||  |||| |     ||| | |||||||||||||| |  || ||||||||| ||||    
T  2997912 cagacgcatacacccccactgtcgtttccattggcccctttcaccatggtcatc-----cac-agctccaaaacatggaacctcagaaactcattcactt 2997819  T
Q  130 caaagcttttctccaacgaac 150  Q
    |||||||||||||||||||||    
T  2997818 caaagcttttctccaacgaac 2997798  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 3004295 - 3004181
Alignment:
Q  31 agacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttc 130  Q
    |||||||||||||||||  ||| ||||||||||||| || |||||| ||      |||| ||| ||||||||||||||    || |||||||||||||||    
T  3004295 agacgcatacacccccactgtcgtttccattggcccctttcaccacggt------cacccccagctccaaaacatggaaaatcagaaactcatttacttc 3004202  T
Q  131 aaagcttttctccaacgaacc 151  Q
    || | |||||||||| |||||    
T  3004201 aaggattttctccaaagaacc 3004181  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 20012172 - 20012305
Alignment:
Q  51 tcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttcaaagcttttctccaacgaac 150  Q
    ||||||||||||| |||||| ||||| || |||   | ||||| || |||||||||||  | |||||||||| |||||||||||| |||||||||||| |    
T  20012172 tcatttccattggtcctttcgaccaccgttacc---atcaccatcttcaaaacatggaatgtcacaaactcagttacttcaaagcatttctccaacgatc 20012268  T
Q  151 ccagacaactctacacaccttcattcactgcatagat 187  Q
    | |||||||| | | |||||||||||||| |||||||    
T  20012269 cgagacaactttgcgcaccttcattcactacatagat 20012305  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 3338807 - 3338859
Alignment:
Q  99 aaaacatggagcgccacaaactcatttacttcaaagcttttctccaacgaacc 151  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  3338807 aaaacatggaacgtcacaaactcatttacttcaaagcttttctccaacgaacc 3338859  T

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Target: scaffold0024 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 35741 - 35627
Alignment:
Q  31 agacgcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttc 130  Q
    ||||||||||||||| ||  || ||||||||||||| || |||||| |||||| ||| |      || |||||||||| || ||||||||||||||||||    
T  35741 agacgcatacacccctaatttcgtttccattggcccctttcaccacggtcacccccagc------tcaaaaacatggaacgtcacaaactcatttacttc 35648  T
Q  131 aaagcttttctccaacgaacc 151  Q
    |||| ||||||||||||||||    
T  35647 aaagattttctccaacgaacc 35627  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 1835002 - 1835052
Alignment:
Q  137 tttctccaacgaacccagacaactctacacaccttcattcactgcatagat 187  Q
    ||||||||||||||| |||||||||||| ||||||| |||||| |||||||    
T  1835002 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagat 1835052  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 40320473 - 40320523
Alignment:
Q  137 tttctccaacgaacccagacaactctacacaccttcattcactgcatagat 187  Q
    ||||||||||||||| |||||||||||| ||||||| |||||| |||||||    
T  40320473 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagat 40320523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 41407094 - 41407044
Alignment:
Q  137 tttctccaacgaacccagacaactctacacaccttcattcactgcatagat 187  Q
    ||||||||||||||| |||||||||||| ||||||| |||||| |||||||    
T  41407094 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagat 41407044  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 24227971 - 24227921
Alignment:
Q  137 tttctccaacgaacccagacaactctacacaccttcattcactgcatagat 187  Q
    ||||||||||||||| |||||||||||| ||||||| |||||| |||||||    
T  24227971 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagat 24227921  T

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