View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_9 (Length: 491)
Name: NF2898_low_9
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 42198607 - 42198128
Alignment:
| Q |
1 |
acttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42198607 |
acttgacaaccttgaacttgcaaggaaactctttgaaaggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacaactg |
42198508 |
T |
|
| Q |
101 |
gttgtcagggaacattcctaaattagaagtaa----gcggattgaaaatacttgtgatggctagaaacaaatttagtggctcgattccaaatagtctagg |
196 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42198507 |
gttgtcagggaacattcctaaattagaagtaattaagcggattgaaaatacttgtgatggctagaaacaaatttagtggctcaattccaaatagtctagg |
42198408 |
T |
|
| Q |
197 |
ggatttagcatcacttgtgactttggatctat-catcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198407 |
ggatttagcatcacttgtgactttggatctattcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaa |
42198308 |
T |
|
| Q |
296 |
tttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggcctt |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198307 |
tttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggcctt |
42198208 |
T |
|
| Q |
396 |
aacaatcaagtcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
480 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198207 |
aacaatc-----aagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
42198128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 480
Target Start/End: Complemental strand, 42211177 - 42210704
Alignment:
| Q |
2 |
cttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttgg |
101 |
Q |
| |
|
||||||||| || |||| || ||||| ||| |||| |||||| |||||||| | || ||||||||||| |||||| |||||||| ||||| ||| | |
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| T |
42211177 |
cttgacaactttatacttacatggaaattctctgaacggttcgcttcctcctcaattcaaaatggagcagctagaggccatggttgtttcggacaacaag |
42211078 |
T |
|
| Q |
102 |
ttgtcagggaacattcctaaattagaagtaagcggattgaaaatacttgtgatggctagaaacaaatttagtggctcgattccaaatagtctaggggatt |
201 |
Q |
| |
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|||||||||||||||||||| | ||||| | ||||||||||| |||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
42211077 |
ctgtcagggaacattcctaaaatcgaagttaacggattgaaaacacttatgatggcaagaaacaattttagtggctcaattccaaatagtctaggggatt |
42210978 |
T |
|
| Q |
202 |
tagcatcacttgtgactttggatctatcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtc |
301 |
Q |
| |
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| |||| ||||||||||| |||||||||||||||| ||||||||||| ||| ||||| |||||||||||||| |||||||||||| |||||||||||| |
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| T |
42210977 |
tgccatcccttgtgactttagatctatcatcaaacagtctcactggtccaatccctgagagtttagaaaagctcaagtatatggtgaaattaaatttgtc |
42210878 |
T |
|
| Q |
302 |
tttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaat |
401 |
Q |
| |
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|||||| | |||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42210877 |
cttcaacaaattggaaggggaagttcctatggaaggtatttttatgaacctaagccaggttgatctccaaggtaacaacaaactatgtggccttaacaat |
42210778 |
T |
|
| Q |
402 |
caagtcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
480 |
Q |
| |
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| |||||||||||||||| ||||| ||||||| |||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
42210777 |
c-----aagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaacaagagaaacattttactacctat |
42210704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 2 - 406
Target Start/End: Complemental strand, 42223393 - 42222989
Alignment:
| Q |
2 |
cttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttgg |
101 |
Q |
| |
|
||||||||| || |||| || ||||| ||| ||||||||||| |||||||| ||| || |||||||| |||| | |||||||| |||| ||| | |
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| T |
42223393 |
cttgacaactttatacttacatggaaattctctgaatggttcgcttcctccttcgttcaagatggagcagctagtggccatggttgtttcagacaacatg |
42223294 |
T |
|
| Q |
102 |
ttgtcagggaacattcctaaattagaagtaagcggattgaaaatacttgtgatggctagaaacaaatttagtggctcgattccaaatagtctaggggatt |
201 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||||||||| ||| |||||||| |||||||| ||||||||||| ||||||||||||||||| |||| |
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|
| T |
42223293 |
ctgtcagggaacattcctaaaatcgaagttgacggattgaaaacactagtgatggcaagaaacaattttagtggctcaattccaaatagtctaggtgatt |
42223194 |
T |
|
| Q |
202 |
tagcatcacttgtgactttggatctatcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtc |
301 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |
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|
| T |
42223193 |
tagcatcccttgtgactttagatctatcatcaaacaatctcactggttcaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtc |
42223094 |
T |
|
| Q |
302 |
tttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaat |
401 |
Q |
| |
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|||||| | |||||||| || |||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
42223093 |
cttcaacaaattggaaggggaagttcctatggaaggcgtttttatgaacctaagccaggttgatatccaaggtaacaacaaactatgtggccttaacaat |
42222994 |
T |
|
| Q |
402 |
caagt |
406 |
Q |
| |
|
|||| |
|
|
| T |
42222993 |
gaagt |
42222989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 227 - 480
Target Start/End: Original strand, 33700929 - 33701177
Alignment:
| Q |
227 |
atcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacatt |
326 |
Q |
| |
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||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| || || |
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| T |
33700929 |
atcatcaaacaatctcactggtccaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaaggggaagtt |
33701028 |
T |
|
| Q |
327 |
cctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttggg |
426 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||| |||||||| || |
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| T |
33701029 |
cctatggaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgtggcgttaacaa-----tgaagttacccacaagttagg |
33701123 |
T |
|
| Q |
427 |
agtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
480 |
Q |
| |
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||| ||||||| ||||||| ||| ||| |||| | |||||||||||| ||||| |
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|
| T |
33701124 |
agtcactttgtgtgttgcatctaagaaaaacaaaacaaacattttactacctat |
33701177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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