View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2899_low_1 (Length: 434)
Name: NF2899_low_1
Description: NF2899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2899_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 49592912 - 49592560
Alignment:
| Q |
1 |
catgaatctcacaataatgtcccttttaggaatcgatgtaacatgggagggttagtgatattgatatgcatgattgtttcatggatattcttacatagat |
100 |
Q |
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|||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49592912 |
catgaatctcacaataatgtcccttttaagaatagatgcaacatgggagggttagtgatattgatatgcatgattgtttcatggatattcttacatagat |
49592813 |
T |
|
| Q |
101 |
ggagtcaaaggaacaaaaaaggacccaaaacttggccatttcttggagctgcaattgaacaattgatgaactatgatagaatgcatgatttgcttgtcca |
200 |
Q |
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| T |
49592812 |
ggagtcaaaggaacaaaaaaggacccaaaacttggccatttcttggagctgcaattgaacaattgatgaactatgatagaatgcatgattggcttgtcca |
49592713 |
T |
|
| Q |
201 |
atatttttccatgtccaaaactgttgtggtccccatgccgttcacaacttatacatacattgctgatcctgttaatgttgaacatgttcttaagaccaac |
300 |
Q |
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| T |
49592712 |
atatttttccatgtccaaaactgttgtggtccccatgccgttcacaacttatacatacattgctgatcctgttaatgttgaacatgttcttaagaccaac |
49592613 |
T |
|
| Q |
301 |
ttcaataattaacctaaggtaatcgannnnnnnctcacttcaatagcccttat |
353 |
Q |
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| T |
49592612 |
ttcaataattatcctaaggtaatcgatttttttctcacttcaatagcccttat |
49592560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 49592524 - 49592453
Alignment:
| Q |
349 |
cttatgggacaaatgtgtatgtggaatcatgtttaatgttaatattcttttgatggaaacacttgtgattat |
420 |
Q |
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| T |
49592524 |
cttatgggacaaatgtggatgtggaatcatgtttaatgttaataatcttttgatggaaatacttgtgattat |
49592453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 40 - 325
Target Start/End: Original strand, 7235178 - 7235463
Alignment:
| Q |
40 |
aacatgggagggttagtgatattgatatgcatgattgtttcatggatattcttacatagatggagtcaaaggaacaaaaaaggacccaaaacttggccat |
139 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7235178 |
aacatgggagggttagtgatattgatatgcatgattttttcatggatattcttacatagatggagtcaaaggaacaaaaaaggacccaaaacttggccat |
7235277 |
T |
|
| Q |
140 |
ttcttggagctgcaattgaacaattgatgaactatgatagaatgcatgatttgcttgtccaatatttttccatgtccaaaactgttgtggtccccatgcc |
239 |
Q |
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| T |
7235278 |
ttcttggagctgcaattgaacaattgatgaactatgatagaatgcatgattggcttgtccaatatttttccatgtccaaaactgttgttgtccccatgcc |
7235377 |
T |
|
| Q |
240 |
gttcacaacttatacatacattgctgatcctgttaatgttgaacatgttcttaagaccaacttcaataattaacctaaggtaatcg |
325 |
Q |
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| T |
7235378 |
gttcacaacttatacatacattgctgatcctgttaatgttgaacatgttcttaagaccaacttcagtaattacccaaaagtaatcg |
7235463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 8052472 - 8052365
Alignment:
| Q |
97 |
agatggagtcaaaggaacaaaaaaggacc-caaaacttggccatttcttggagctgcaattgaacaattgatgaactatgatagaatgcatgatttgctt |
195 |
Q |
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|||||||||||||||||||||||| | || |||||| ||| | |||||| ||||| |||||||||||||||||||||||| ||||||||||| |||| |
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| T |
8052472 |
agatggagtcaaaggaacaaaaaaaggcctcaaaacatggtcccttcttgaagctgacattgaacaattgatgaactatgatgaaatgcatgattggctt |
8052373 |
T |
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| Q |
196 |
gtccaata |
203 |
Q |
| |
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||| |||| |
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| T |
8052372 |
gtcaaata |
8052365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 8052365 - 8052313
Alignment:
| Q |
220 |
actgttgtggtccccatgccgttcacaacttatacatacattgctgatcctgtt |
273 |
Q |
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||||||||||||||| |||| |||||||||||||| ||||||| ||||| |||| |
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| T |
8052365 |
actgttgtggtccccgtgccattcacaacttatac-tacattgttgatcttgtt |
8052313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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