View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2899_low_4 (Length: 270)
Name: NF2899_low_4
Description: NF2899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2899_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 46777648 - 46777912
Alignment:
| Q |
1 |
gtattattgattggaaaatgcttgattttcgttaannnnnnnncttctcaattcttactata----------gatataaattatttaaagttgnnnnnnn |
90 |
Q |
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|||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| | |
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| T |
46777648 |
gtattactgattggaaaatgcttgattttcgataaaaaaatttcttctcaattcttactataaagcactattgatataaattatttaaagtcgaaaaaaa |
46777747 |
T |
|
| Q |
91 |
nttcaacaacnnnnnnnttacgagaaatcgttattaattaaagtaacatcaatcaacattttacaatgatcgttcgaaactacaataccaaacttcttac |
190 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46777748 |
attcaacaacaaaaaatttacgagaaattgttattaattaaagtaacatcaatcaacattttacaatgatcgttcgaaactacaataccaaacttcttac |
46777847 |
T |
|
| Q |
191 |
tgggctgagtnnnnnnntaagaaatgaaattcctcttttcttttcccctcttgtgtggtatacgt |
255 |
Q |
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| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46777848 |
ttgactgagtaaaaaaataagaaatgaaattcctcttttcttttcccctcttgtgtggtatacgt |
46777912 |
T |
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