View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2899_low_6 (Length: 226)
Name: NF2899_low_6
Description: NF2899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2899_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 18478331 - 18478152
Alignment:
| Q |
1 |
ctcacttgttcccgagaagtgcatgaagctggataatattgtgatcttcttctgagctgaagtttcctcgttttatatcaggattcaggtagttaatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
18478331 |
ctcacttgttcccgagaagtgcatgaagctgaataatattgtgatcttcttctgagctgaagtttcctcgttttatatctggaatcatgtagttaatcca |
18478232 |
T |
|
| Q |
101 |
cctcagtctgcaactctttccacatcttctaagacctgtatataaactcaagattcctggttaatatattatacgtatat |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18478231 |
cctcagtctgcaactctttccacatcttctaagaactgtatataaactcaagattcctggttaatatattatacgtatat |
18478152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 20068605 - 20068568
Alignment:
| Q |
85 |
tcaggtagttaatccacctcagtctgcaactctttcca |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20068605 |
tcaggtagttaatccaccttagtctgcaactctttcca |
20068568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University