View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_high_17 (Length: 247)
Name: NF2900_high_17
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 46001319 - 46001451
Alignment:
| Q |
1 |
ccaattctaattgagaattgaactcccaaccacttgctaagatttagttgctgcaatattatatagatcccttagtatgtgttacgtgtgtatgtttgtt |
100 |
Q |
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| T |
46001319 |
ccaattctaatagagaattgaactcccaaccacttgctaagatttagttgctgcaatattatatagatcccttagtatgtgttacatgtgtatgtttgtt |
46001418 |
T |
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| Q |
101 |
gatgtttataaactcatttgctacccaacttag |
133 |
Q |
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| T |
46001419 |
gatgtttataaactcatttgctatccaacttag |
46001451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 46001828 - 46001936
Alignment:
| Q |
129 |
cttagaggatataattaatttgtcatttgaattaaattaaaattacaagagagaaaccattaacctgcatgttttgagaaagttccttctcacactttac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46001828 |
cttagaggatataattaatttgtcatttgaattaaattaaaattacaagagagaaaccattaac---catgttttgagaaagttccttctcacactttac |
46001924 |
T |
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| Q |
229 |
cattttcctttg |
240 |
Q |
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|||||||||||| |
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| T |
46001925 |
cattttcctttg |
46001936 |
T |
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