View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_high_22 (Length: 210)
Name: NF2900_high_22
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_high_22 |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 1869849 - 1869650
Alignment:
| Q |
11 |
gcagaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtg |
110 |
Q |
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| T |
1869849 |
gcagaacgtgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaggtg |
1869750 |
T |
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| Q |
111 |
ataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
210 |
Q |
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| T |
1869749 |
ataatactcttccagagatcaaagcaagagtgtcaaaaaaagatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
1869650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 1916910 - 1916815
Alignment:
| Q |
115 |
tactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
210 |
Q |
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| T |
1916910 |
tactcttccagaggtcaaagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgac |
1916815 |
T |
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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 1916988 - 1916916
Alignment:
| Q |
13 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattca |
85 |
Q |
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| T |
1916988 |
agaacgtgtgagagagctagaagaagaagctggatccaacatttgtactaacaaaaggaccaaactgagttca |
1916916 |
T |
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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 17488694 - 17488497
Alignment:
| Q |
13 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
112 |
Q |
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| T |
17488694 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17488595 |
T |
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| Q |
113 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
210 |
Q |
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| T |
17488594 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgac |
17488497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 17564520 - 17564717
Alignment:
| Q |
13 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
112 |
Q |
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| T |
17564520 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17564619 |
T |
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| Q |
113 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
210 |
Q |
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| T |
17564620 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgac |
17564717 |
T |
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