View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2900_high_3 (Length: 502)
Name: NF2900_high_3
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 33938644 - 33938153
Alignment:
| Q |
1 |
ttgattttcgtaagctcaaaaacaatcctactatatagtgagagatgatgaagaacgcgggattcgagcacgttcttagatattttgatgaagatggtga |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
33938644 |
ttgattttcataagctcaaaaacaatcctactatatagtgagagatgatgaagaacgcgggattcgagcatgttcttagatattttgacgaagatggtga |
33938545 |
T |
|
| Q |
101 |
cggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaagctgaaatggctattgaagcgatggattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33938544 |
tggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattca |
33938445 |
T |
|
| Q |
201 |
gatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagaggaacaaaagttgaaggatttgagagaagcatttgagatgt |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33938444 |
gatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagaggaacaaaagttgaaggatttgagagaagcatttgagatgt |
33938345 |
T |
|
| Q |
301 |
atgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaagatgggggaaactaagtctattgatgaatgtaaagctatgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
33938344 |
atgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgat |
33938245 |
T |
|
| Q |
401 |
taaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgatgatgttatatatgtttcgattcat |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33938244 |
taaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgatgcagtgatgatgttatatatgttttgattcat |
33938153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 47 - 468
Target Start/End: Complemental strand, 33931793 - 33931372
Alignment:
| Q |
47 |
gatgaagaacgcgggattcgagcacgttcttagatattttgatgaagatggtgacggaaaggtttcaccagcagagctaagacaaaggctaagaataatg |
146 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33931793 |
gatgaagaatgcgggattcgagcatgttcttagatattttgacgaagatggtgatggaaaggtttcaccagcagagctaagacaaaggctaagaataatg |
33931694 |
T |
|
| Q |
147 |
ggagaagagattttattgaaagaagctgaaatggctattgaagcgatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatgg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33931693 |
ggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatgg |
33931594 |
T |
|
| Q |
247 |
aggaagggggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagag |
346 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33931593 |
aagaaggtggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagag |
33931494 |
T |
|
| Q |
347 |
gatgcttaagaagatgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaa |
446 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33931493 |
gatgcttaagaagatgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaa |
33931394 |
T |
|
| Q |
447 |
ttcataacaatgatgcagtgat |
468 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33931393 |
ttcataacaatgatgcagtgat |
33931372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 161 - 467
Target Start/End: Complemental strand, 42840097 - 42839791
Alignment:
| Q |
161 |
attgaaagaagctgaaatggctattgaagcgatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
260 |
Q |
| |
|
||||||||||| || || |||||||| || ||||||| |||||||||| | |||||||||||||| || || || | ||||| |||||||||| |
|
|
| T |
42840097 |
attgaaagaagtggagattgctattgaggcattggattctgatggtgatgggttattgagtttggaggatttgatagcgctaatggaatcagggggagag |
42839998 |
T |
|
| Q |
261 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
360 |
Q |
| |
|
||| |||| |||||||||||||| ||||| ||||| ||||||||| ||| |||||| | |||||||| |||||||||||||||||| | || ||| |
|
|
| T |
42839997 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacaccaaagagtttgaagaggatgttgaaaaagt |
42839898 |
T |
|
| Q |
361 |
tgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattcataacaatgat |
460 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||| || |||| || ||||| |
|
|
| T |
42839897 |
tgggggattctaagtccattgaagaatgtaaagtgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagagttcagaatcatgat |
42839798 |
T |
|
| Q |
461 |
gcagtga |
467 |
Q |
| |
|
| ||||| |
|
|
| T |
42839797 |
ggagtga |
42839791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 161 - 450
Target Start/End: Complemental strand, 42846905 - 42846616
Alignment:
| Q |
161 |
attgaaagaagctgaaatggctattgaagcgatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
260 |
Q |
| |
|
||||||||||| |||||| |||||||| || ||||||| |||||||||| | |||||||||| || || ||| | || ||||| |||||||||| |
|
|
| T |
42846905 |
attgaaagaagttgaaattgctattgaggcattggattctgatggtgatgggttattgagtttgggagatttgattacgttaatggaatcagggggagag |
42846806 |
T |
|
| Q |
261 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
360 |
Q |
| |
|
|| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || ||||| || || ||||||||||||||| | || || |
|
|
| T |
42846805 |
gaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgccaaaaagtttgaagaggatgttgaaaaaac |
42846706 |
T |
|
| Q |
361 |
tgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
450 |
Q |
| |
|
||||||| ||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42846705 |
tgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42846616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 251 - 450
Target Start/End: Complemental strand, 42849802 - 42849603
Alignment:
| Q |
251 |
agggggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatg |
350 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || |||||||| || ||||||||||||||| |
|
|
| T |
42849802 |
agggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatg |
42849703 |
T |
|
| Q |
351 |
cttaagaagatgggggaaactaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
450 |
Q |
| |
|
| || || ||||||| ||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
42849702 |
ttgaaaaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
42849603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University