View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2900_high_7 (Length: 460)

Name: NF2900_high_7
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2900_high_7
NF2900_high_7
[»] chr1 (9 HSPs)
chr1 (38-456)||(50391921-50392343)
chr1 (321-435)||(11199914-11200030)
chr1 (371-435)||(43834538-43834602)
chr1 (359-434)||(52551269-52551344)
chr1 (399-441)||(39030152-39030194)
chr1 (394-442)||(6356867-6356916)
chr1 (376-440)||(4392238-4392302)
chr1 (363-435)||(11766028-11766100)
chr1 (358-434)||(38637540-38637616)
[»] chr5 (6 HSPs)
chr5 (363-433)||(27856164-27856234)
chr5 (358-441)||(28296072-28296155)
chr5 (371-418)||(18415618-18415665)
chr5 (357-433)||(15159178-15159254)
chr5 (363-433)||(21488819-21488889)
chr5 (369-433)||(33244869-33244933)
[»] chr8 (5 HSPs)
chr8 (394-443)||(19263309-19263358)
chr8 (400-443)||(38291857-38291900)
chr8 (370-435)||(5073024-5073089)
chr8 (361-410)||(2372874-2372923)
chr8 (358-423)||(1418035-1418100)
[»] chr7 (6 HSPs)
chr7 (368-453)||(38116719-38116804)
chr7 (375-443)||(27938807-27938875)
chr7 (368-431)||(25078144-25078207)
chr7 (370-441)||(45100226-45100297)
chr7 (358-435)||(33730103-33730180)
chr7 (394-435)||(6677091-6677132)
[»] chr3 (10 HSPs)
chr3 (394-443)||(50435-50484)
chr3 (374-435)||(42059846-42059907)
chr3 (376-435)||(43978626-43978685)
chr3 (380-433)||(43407680-43407733)
chr3 (369-433)||(37626642-37626706)
chr3 (394-441)||(15863149-15863196)
chr3 (363-405)||(28979035-28979077)
chr3 (379-440)||(23161955-23162016)
chr3 (372-432)||(46954880-46954940)
chr3 (372-440)||(51677343-51677411)
[»] chr2 (7 HSPs)
chr2 (371-440)||(19548187-19548256)
chr2 (371-454)||(8252621-8252704)
chr2 (371-435)||(10066574-10066638)
chr2 (371-443)||(34217580-34217652)
chr2 (369-420)||(40732555-40732606)
chr2 (400-443)||(6467003-6467046)
chr2 (394-443)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (394-443)||(193-242)
[»] chr6 (3 HSPs)
chr6 (372-441)||(14221276-14221345)
chr6 (370-427)||(28940816-28940873)
chr6 (369-418)||(33424561-33424610)
[»] chr4 (6 HSPs)
chr4 (394-443)||(22681170-22681219)
chr4 (371-441)||(11307624-11307694)
chr4 (371-441)||(26986701-26986771)
chr4 (372-432)||(21748248-21748308)
chr4 (400-443)||(42756772-42756815)
chr4 (379-441)||(20090557-20090619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (370-441)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (370-441)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 38 - 456
Target Start/End: Complemental strand, 50392343 - 50391921
Alignment:
Q  38 atagcaatatcactcataacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagagagcaata 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392343 atagcaatatcactcataacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagagagcaata 50392244  T
Q  138 cccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaacaatagaataaatggtagc----aaacaacaaagatagaatgaaga 233  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||||||||||||||||    
T  50392243 tccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaagaatagaataaatggtagctagcaaacaacaaagatagaatgaaga 50392144  T
Q  234 ggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggattttaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392143 ggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggattttaa 50392044  T
Q  334 gtatgagtgtttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 433  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392043 gtatgagtggttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 50391944  T
Q  434 gtcgtgtcaacctctattatgct 456  Q
    |||||||||||||||||||||||    
T  50391943 gtcgtgtcaacctctattatgct 50391921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 435
Target Start/End: Original strand, 11199914 - 11200030
Alignment:
Q  321 tgttggattttaagtatgagtgttta-gtcgcacattgc-tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 418  Q
    |||||| |||||||| |||||| ||| ||| |||||||| ||| |||  |||||||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  11199914 tgttgggttttaagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgccttaag 11200013  T
Q  419 gttttggatggagatgt 435  Q
    ||||||| |||||||||    
T  11200014 gttttgggtggagatgt 11200030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 43834538 - 43834602
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    |||||||| |||||||||| | | ||| ||||||||||||||||||||||||| |||||||||||    
T  43834538 aaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgt 43834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 52551269 - 52551344
Alignment:
Q  359 tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 434  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||||| |||||| ||| || |||| |||| |||||    
T  52551269 tataaatgtgtaaaatgttagatatatgagagatgtgacacatatatctaatgccttgagattttagatgaagatg 52551344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 39030152 - 39030194
Alignment:
Q  399 catatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    ||||||||||||||||||||||||| | ||||||||| |||||    
T  39030152 catatacctaatgtcttaaggttttaggtggagatgtggtgtc 39030194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 6356916 - 6356867
Alignment:
Q  394 tgactcatatacctaatgtctt-aaggttttggatggagatgtcgtgtca 442  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||||    
T  6356916 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 6356867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 4392302 - 4392238
Alignment:
Q  376 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 440  Q
    |||||||||||| | | | ||| ||||||||| ||| |||||| |||||||||||||||| ||||    
T  4392302 ttggatatataacagaggagacccatatacctgatgccttaagattttggatggagatgtggtgt 4392238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 11766100 - 11766028
Alignment:
Q  363 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    |||| |||||||||||||| ||||||| |  ||||  ||  |||||||| ||||||||||||| |||||||||    
T  11766100 aatgggtaaaatgttggatttataagagagttgacctattaacctaatgccttaaggttttgggtggagatgt 11766028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 434
Target Start/End: Original strand, 38637540 - 38637616
Alignment:
Q  358 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 434  Q
    |||||||||  |||||||||||  |||||||  | |||||  |||||||||||| |||||||| |||| ||||||||    
T  38637540 ctataaatggataaaatgttggccatataagtgaggtgacctatatacctaatgccttaaggtattgggtggagatg 38637616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 433
Target Start/End: Original strand, 27856164 - 27856234
Alignment:
Q  363 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 433  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||| |||||||    
T  27856164 aatgggtaaaatgttggatatataagagaggtggctcatatacctaatgccttaaagttttgggtggagat 27856234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 441
Target Start/End: Complemental strand, 28296155 - 28296072
Alignment:
Q  358 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    |||| |||| ||||||| ||| || ||||||| | ||||| |||||||||||| |||||||||||||| ||||||||| |||||    
T  28296155 ctatgaatgagtaaaatattgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtc 28296072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 18415665 - 18415618
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaag 418  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  18415665 aaatgttggatatataagataggagactcataaacctaatgtcttaag 18415618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 433
Target Start/End: Complemental strand, 15159254 - 15159178
Alignment:
Q  357 gctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 433  Q
    ||||||||||  |||||||||  || ||||||| |||||||||||||| ||||||| || | ||||||| |||||||    
T  15159254 gctataaatggataaaatgttacatgtataagagatgtgactcatatatctaatgttttgaagttttgggtggagat 15159178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 433
Target Start/End: Complemental strand, 21488889 - 21488819
Alignment:
Q  363 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 433  Q
    |||| |||||||||||||||||||||| ||||||| | || || | |||||||||| |||| | |||||||    
T  21488889 aatgagtaaaatgttggatatataagagatgtgacccttaaacttgatgtcttaagatttttggtggagat 21488819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 33244869 - 33244933
Alignment:
Q  369 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 433  Q
    |||||||||||||||||||||||||||| || ||||  ||||   |||| ||||||||| |||||    
T  33244869 taaaatgttggatatataagatatgtgaatcgtatatttaatacattaaagttttggatagagat 33244933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 19263358 - 19263309
Alignment:
Q  394 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  19263358 tgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaa 19263309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 38291857 - 38291900
Alignment:
Q  400 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaa 38291900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 5073024 - 5073089
Alignment:
Q  370 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    |||||||||||||||||||| | | | ||||||||| ||||| ||||||||||||| |||||||||    
T  5073024 aaaatgttggatatataagagaggcgtctcatatacgtaatgccttaaggttttgggtggagatgt 5073089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 2372874 - 2372923
Alignment:
Q  361 taaatgtgtaaaatgttggatatataagatatgtgactcatatacctaat 410  Q
    |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  2372874 taaatgggtatattgttggatatataagatatgtgactcatatacataat 2372923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 1418100 - 1418035
Alignment:
Q  358 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggtttt 423  Q
    |||| |||| ||||||| ||||||||||||||||| ||| ||||||| | ||||| |||| |||||    
T  1418100 ctatgaatgagtaaaatattggatatataagatatttgattcatatatcaaatgttttaaagtttt 1418035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 38116804 - 38116719
Alignment:
Q  368 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattat 453  Q
    ||||||| |||| ||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||| || ||| ||||| ||||    
T  38116804 gtaaaatattggctatataagatatgtgacacgtatacataacgtcttaaggttttggatgaagatgtggtttcatcctctcttat 38116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 27938807 - 27938875
Alignment:
Q  375 gttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||||||||||||| | | ||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  27938807 gttggatatataagaaaggagactcatatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 431
Target Start/End: Original strand, 25078144 - 25078207
Alignment:
Q  368 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggag 431  Q
    |||||||| | ||||||||||| |||||| |||||||| ||||||||||||||||||| |||||    
T  25078144 gtaaaatgatcgatatataagagatgtgattcatatacataatgtcttaaggttttgggtggag 25078207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 45100226 - 45100297
Alignment:
Q  370 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    ||||||||| |||||||||| |  ||||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  45100226 aaaatgttgaatatataagagagatgactcatataactaatgtcttaaagttttagatggagatgtggtgtc 45100297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 435
Target Start/End: Complemental strand, 33730180 - 33730103
Alignment:
Q  358 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    |||| |||| || |||||||||||||| |||| | ||||| |||| | ||||||  ||||||||||||||||||||||    
T  33730180 ctatgaatgggttaaatgttggatataaaagagaggtgacccatagagctaatgcattaaggttttggatggagatgt 33730103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 6677132 - 6677091
Alignment:
Q  394 tgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    ||||||||||||| |||||||||||||||| |||| ||||||    
T  6677132 tgactcatataccaaatgtcttaaggttttagatgaagatgt 6677091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 50435 - 50484
Alignment:
Q  394 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  50435 tgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaa 50484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 42059907 - 42059846
Alignment:
Q  374 tgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    |||| ||||||||||| | | ||| | |||||||||||||||||||||||||||||||||||    
T  42059907 tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatgt 42059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 43978685 - 43978626
Alignment:
Q  376 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    |||||||||||||| | | |||||||||||||| || ||||||||||||| |||||||||    
T  43978685 ttggatatataagagaggagactcatatacctattgccttaaggttttgggtggagatgt 43978626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 43407680 - 43407733
Alignment:
Q  380 atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 433  Q
    |||||||||| | ||||||||||||||||||| | ||||||||||| |||||||    
T  43407680 atatataagaaaggtgactcatatacctaatgacgtaaggttttgggtggagat 43407733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 37626642 - 37626706
Alignment:
Q  369 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 433  Q
    ||||||||||||||||||||| | || |  |||||||||||||||||||| |||| | |||||||    
T  37626642 taaaatgttggatatataagagaggtcatacatatacctaatgtcttaagattttaggtggagat 37626706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Original strand, 15863149 - 15863196
Alignment:
Q  394 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    |||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  15863149 tgactcgtatacttaatgtcttaaggttttgaatggagacgtcgtgtc 15863196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 28979035 - 28979077
Alignment:
Q  363 aatgtgtaaaatgttggatatataagatatgtgactcatatac 405  Q
    |||||||||||| |||||||||||||| | |||||||||||||    
T  28979035 aatgtgtaaaatattggatatataagagaggtgactcatatac 28979077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 23161955 - 23162016
Alignment:
Q  379 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 440  Q
    ||||||||||| | ||||||||||||||  ||| |||||| |||||| ||||||||| ||||    
T  23161955 gatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgt 23162016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 46954940 - 46954880
Alignment:
Q  372 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 432  Q
    |||||| |||||||||||||||| |||||||||| ||| || |||| ||||| || |||||    
T  46954940 aatgtttgatatataagatatgtaactcatatacttaacgttttaaagttttagaaggaga 46954880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 51677343 - 51677411
Alignment:
Q  372 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 440  Q
    ||||||||||||| || | |  ||||||||||||||||||||||   ||||||| ||||||||| ||||    
T  51677343 aatgttggatatagaaaagagatgactcatatacctaatgtcttggagttttgggtggagatgtggtgt 51677411  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 19548187 - 19548256
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 440  Q
    ||||||||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||| ||||    
T  19548187 aaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgt 19548256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 454
Target Start/End: Complemental strand, 8252704 - 8252621
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattatg 454  Q
    ||||||||||||||||||| | || |||| ||||||||| | ||||| ||||||||||||||||| |||||  ||||| |||||    
T  8252704 aaatgttggatatataagagaggtaactcgtatacctaacgccttaaagttttggatggagatgtggtgtcgccctctcttatg 8252621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 10066574 - 10066638
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 435  Q
    ||||||||||||||||||||| | ||  ||||||||||||| |||||| |||||| |||||||||    
T  10066574 aaatgttggatatataagataggagatccatatacctaatgccttaagattttgggtggagatgt 10066638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 34217580 - 34217652
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||| ||||||||||||||| |||||| ||||||||||   ||||||||||||||  ||||||| |||||||    
T  34217580 aaatggtggatatataagataggtgacttatatacctaactccttaaggttttggaatgagatgtggtgtcaa 34217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 40732606 - 40732555
Alignment:
Q  369 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggt 420  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  40732606 taaaatgtttgatatataagataagtggcttatatacctaatgtcttaaggt 40732555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 6467003 - 6467046
Alignment:
Q  400 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  6467003 atataactaatgtcttaagtttttggatggagatgtggtgtcaa 6467046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 20444184 - 20444233
Alignment:
Q  394 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    |||||||||||||||||| |||||||||| ||||| |||| | |||||||    
T  20444184 tgactcatatacctaatgccttaaggtttaggatgaagatatggtgtcaa 20444233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 242 - 193
Alignment:
Q  394 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  242 tgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaa 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 14221276 - 14221345
Alignment:
Q  372 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    |||||||||| ||||||| | |||||||||  | ||||||| |||||||||||||||||||||| |||||    
T  14221276 aatgttggatttataagagaggtgactcattaatctaatgtattaaggttttggatggagatgtggtgtc 14221345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 28940873 - 28940816
Alignment:
Q  370 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggat 427  Q
    ||||||||||| |||||||| | | ||||| |||||||||||||||||| ||||||||    
T  28940873 aaaatgttggacatataagagaagagactcgtatacctaatgtcttaagattttggat 28940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 33424610 - 33424561
Alignment:
Q  369 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 418  Q
    ||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  33424610 taaaatgatagatatataagagatgtgactcatataccaaatgtcttaag 33424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 22681219 - 22681170
Alignment:
Q  394 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  22681219 tgactcatatacctaatgtcttaaggtttagggtggagatgtggtgtcaa 22681170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 11307694 - 11307624
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    ||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  11307694 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 11307624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 26986771 - 26986701
Alignment:
Q  371 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    |||||||| |||||| ||| |  |||| ||||||| ||||| ||||||||||||||||||||||| |||||    
T  26986771 aaatgttgtatatattagaaaaatgacccatatacataatgccttaaggttttggatggagatgtggtgtc 26986701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 21748248 - 21748308
Alignment:
Q  372 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 432  Q
    ||||||| |||||||| | | ||||||||||| |||||||||||||  |||||||||||||    
T  21748248 aatgttgaatatataaaagacgtgactcatatgcctaatgtcttaaaattttggatggaga 21748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 42756815 - 42756772
Alignment:
Q  400 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 443  Q
    |||||||||| |||||||||||||||||| |||||| |||||||    
T  42756815 atatacctaaagtcttaaggttttggatgaagatgtggtgtcaa 42756772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 20090619 - 20090557
Alignment:
Q  379 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    ||||||||||| | |||||| ||||||||||||  ||| |||||||||||| || ||||||||    
T  20090619 gatatataagagaggtgacttatatacctaatgcattagggttttggatggcgacgtcgtgtc 20090557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 4184 - 4113
Alignment:
Q  370 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    |||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  4184 aaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 29063 - 29136
Alignment:
Q  370 aaaatgttgg--atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 441  Q
    ||||||||||  |||||||||| | | |||||||||| || |||||||||| |||||| ||||||||| |||||    
T  29063 aaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtc 29136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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