View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2900_high_8 (Length: 454)

Name: NF2900_high_8
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2900_high_8
NF2900_high_8
[»] chr7 (18 HSPs)
chr7 (80-437)||(38917084-38917432)
chr7 (350-426)||(26199509-26199586)
chr7 (350-428)||(43215182-43215261)
chr7 (350-426)||(22760863-22760940)
chr7 (352-426)||(24513797-24513872)
chr7 (350-426)||(20335830-20335907)
chr7 (350-426)||(26459409-26459486)
chr7 (350-426)||(39499718-39499795)
chr7 (350-420)||(21877814-21877885)
chr7 (350-427)||(17041011-17041089)
chr7 (350-427)||(23552117-23552195)
chr7 (386-420)||(42477104-42477138)
chr7 (354-426)||(7801180-7801253)
chr7 (350-426)||(23301601-23301678)
chr7 (387-428)||(24621813-24621854)
chr7 (350-409)||(7499923-7499983)
chr7 (352-427)||(45709709-45709785)
chr7 (125-169)||(47813416-47813460)
[»] chr5 (9 HSPs)
chr5 (350-426)||(16773807-16773884)
chr5 (351-427)||(30109308-30109385)
chr5 (357-427)||(40461619-40461690)
chr5 (356-406)||(19949621-19949671)
chr5 (350-427)||(26078050-26078128)
chr5 (350-427)||(30883197-30883275)
chr5 (350-427)||(34984805-34984883)
chr5 (350-427)||(43241681-43241759)
chr5 (389-426)||(3252328-3252365)
[»] chr2 (18 HSPs)
chr2 (352-429)||(3001376-3001454)
chr2 (350-427)||(35710390-35710468)
chr2 (351-426)||(12994376-12994452)
chr2 (350-426)||(19244109-19244186)
chr2 (350-427)||(4060213-4060291)
chr2 (350-427)||(37480074-37480152)
chr2 (350-427)||(39714991-39715069)
chr2 (350-426)||(40416389-40416466)
chr2 (350-426)||(42327394-42327471)
chr2 (390-426)||(5147719-5147755)
chr2 (351-426)||(42860348-42860424)
chr2 (352-426)||(28846691-28846766)
chr2 (350-415)||(21213780-21213846)
chr2 (350-427)||(29503270-29503348)
chr2 (351-427)||(34041588-34041665)
chr2 (350-386)||(33582014-33582050)
chr2 (390-426)||(35916086-35916122)
chr2 (352-427)||(38854463-38854539)
[»] chr3 (12 HSPs)
chr3 (350-426)||(14186648-14186724)
chr3 (350-425)||(47454616-47454692)
chr3 (350-428)||(5499406-5499485)
chr3 (350-427)||(8368798-8368876)
chr3 (350-426)||(37788464-37788541)
chr3 (350-427)||(19154630-19154708)
chr3 (354-426)||(2597223-2597296)
chr3 (351-427)||(8051213-8051290)
chr3 (372-424)||(10682964-10683017)
chr3 (398-427)||(24481580-24481609)
chr3 (352-415)||(12761523-12761587)
chr3 (395-427)||(34622567-34622599)
[»] chr6 (9 HSPs)
chr6 (350-428)||(33549102-33549181)
chr6 (350-406)||(346551-346607)
chr6 (350-415)||(3715463-3715529)
chr6 (392-426)||(22995153-22995187)
chr6 (392-426)||(23793213-23793247)
chr6 (353-426)||(32439805-32439879)
chr6 (352-423)||(4105051-4105126)
chr6 (392-424)||(22995077-22995109)
chr6 (392-424)||(23793291-23793323)
[»] chr8 (9 HSPs)
chr8 (350-427)||(16852339-16852417)
chr8 (350-427)||(19703486-19703564)
chr8 (350-426)||(968362-968439)
chr8 (350-424)||(3624582-3624657)
chr8 (372-428)||(17727447-17727504)
chr8 (350-426)||(18540298-18540375)
chr8 (350-427)||(8484998-8485076)
chr8 (350-415)||(18546361-18546427)
chr8 (352-429)||(34966851-34966929)
[»] scaffold0258 (1 HSPs)
scaffold0258 (350-426)||(15322-15399)
[»] chr1 (16 HSPs)
chr1 (350-422)||(9224779-9224852)
chr1 (350-422)||(14787335-14787408)
chr1 (347-426)||(37400274-37400354)
chr1 (350-429)||(51814491-51814571)
chr1 (86-153)||(16138143-16138210)
chr1 (350-428)||(25297770-25297849)
chr1 (350-426)||(2219972-2220049)
chr1 (386-427)||(34460945-34460986)
chr1 (347-427)||(40257398-40257479)
chr1 (86-153)||(16127053-16127120)
chr1 (89-156)||(33731163-33731230)
chr1 (376-426)||(38978967-38979018)
chr1 (356-429)||(29817672-29817746)
chr1 (350-422)||(17745255-17745328)
chr1 (350-426)||(19528326-19528403)
chr1 (350-406)||(52029936-52029993)
[»] scaffold0517 (1 HSPs)
scaffold0517 (347-426)||(7722-7802)
[»] chr4 (12 HSPs)
chr4 (347-422)||(13901746-13901822)
chr4 (350-426)||(37109350-37109427)
chr4 (350-405)||(19112929-19112985)
chr4 (352-426)||(46545711-46545786)
chr4 (350-423)||(52254403-52254477)
chr4 (350-426)||(3780659-3780736)
chr4 (350-422)||(43623443-43623516)
chr4 (350-426)||(47044717-47044794)
chr4 (352-419)||(306311-306379)
chr4 (350-426)||(19229207-19229283)
chr4 (352-427)||(21660145-21660221)
chr4 (352-427)||(21668909-21668985)
[»] scaffold0118 (1 HSPs)
scaffold0118 (350-426)||(41632-41709)
[»] scaffold0211 (1 HSPs)
scaffold0211 (352-426)||(24053-24128)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 80 - 437
Target Start/End: Complemental strand, 38917432 - 38917084
Alignment:
Q  80 ggcagccttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaatagttgaccatctgcatcatcatt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917432 ggcagccttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaatagttgaccatctgcatcatcatt 38917333  T
Q  180 aaaccattaaataaatgtttgcacaacaaaatcatgctctatattcatgcttgattttgtaatattcattaactaagttaaccaaaattagacnnnnnnn 279  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||           
T  38917332 aaaccattaaataaatatttgcacaacaaaatcatgctctatattcatgcttgattttgtaatattcat---------taaccaaaattagacaaaaaaa 38917242  T
Q  280 catttttattttacataagtttctttcacccgacctaacannnnnnngaataatcaaaatcgacactgatagaatcgaacctgagacctcaaagagaagc 379  Q
    |||||||||||||||||||||||||||| ||||||||| |       |||||| | |||| |||||||| |||||||||| |||||| |||| |||||||    
T  38917241 catttttattttacataagtttctttcatccgacctaatatttttttgaataagctaaattgacactgaaagaatcgaacttgagacttcaaggagaagc 38917142  T
Q  380 acactctaggtctcaagtcaataccactagaccaactcaagtgggttttacctgacct 437  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  38917141 acattctaagtctcaagttaataccactagaccaactcaagtgggtttcacctgacct 38917084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 26199586 - 26199509
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||| ||||||||| || ||| ||| ||||| |||| |||||||||||| ||||||||||||||||    
T  26199586 agaatcgaacctgagatctcaaagaggagtacattctcaggtcccaagccaataccactaggccaactcaagtgggtt 26199509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 43215261 - 43215182
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 428  Q
    |||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||||||||| ||||||||||||    
T  43215261 agaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtttt 43215182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 22760940 - 22760863
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | ||| |||||||||  ||||| |||||||||||||| |||||||| ||||||||||    
T  22760940 agaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 24513872 - 24513797
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| |||||| ||||| | |  ||||||| |||||||||||| ||||| ||||||||||    
T  24513872 aatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaataccactaggccaacccaagtgggtt 24513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 20335830 - 20335907
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| | ||| |||||||| | | ||| |||| ||||||| |||||||||| ||||||||||    
T  20335830 agaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 26459409 - 26459486
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  26459409 agaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 39499718 - 39499795
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||| |||||||| |||||| | |||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  39499718 agaatcgaacatgagaccttaaagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgggtt 39499795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 420
Target Start/End: Complemental strand, 21877885 - 21877814
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaag 420  Q
    |||||||||| |||||||| || ||| ||||| |||  ||||| ||||||||||||||||| ||||||||||    
T  21877885 agaatcgaacgtgagaccttaaggaggagcaccctcccaggtcccaagtcaataccactaggccaactcaag 21877814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 17041011 - 17041089
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||  | ||| |||||||| | || || |||| |||| ||||||||||||| |||||||||||    
T  17041011 agaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggttt 17041089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 23552195 - 23552117
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||| ||||||||  | ||| |||||||||  ||||| |||||||||| |||||| ||||| |||||||||||    
T  23552195 agaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggttt 23552117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 42477104 - 42477138
Alignment:
Q  386 taggtctcaagtcaataccactagaccaactcaag 420  Q
    |||||||||||||||||||||||||||||| ||||    
T  42477104 taggtctcaagtcaataccactagaccaacccaag 42477138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 7801253 - 7801180
Alignment:
Q  354 tcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||  ||||| |||||||||  ||||| |||||||||||||| || ||||  ||||||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 23301601 - 23301678
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||| ||| ||||||||||| ||| |||||||||  | ||| |||||||||||||| || ||||| ||||||||||    
T  23301601 agaatcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 24621854 - 24621813
Alignment:
Q  387 aggtctcaagtcaataccactagaccaactcaagtgggtttt 428  Q
    |||||||||||||||| ||||| |||||||||| ||||||||    
T  24621854 aggtctcaagtcaatatcactaaaccaactcaaatgggtttt 24621813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 7499923 - 7499983
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactag 409  Q
    |||||||||||||||||||| ||||| |||| ||||| ||||| |||| ||||| ||||||    
T  7499923 agaatcgaacctgagacctcgaagaggagcaaactctcaggtcccaagccaatatcactag 7499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 45709709 - 45709785
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||| | ||| |||||||||| || || ||||  ||||||||||| ||||| ||| |||||||    
T  45709709 aatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaaatgggttt 45709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 47813460 - 47813416
Alignment:
Q  125 ttatctgttcgtccgggtaatcttgctgcaatagttgaccatctg 169  Q
    |||||||||||||| ||||||||||||||||| |  |||||||||    
T  47813460 ttatctgttcgtcctggtaatcttgctgcaattgcagaccatctg 47813416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 16773884 - 16773807
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| | ||| |||||||||  ||||| |||||||||||||| |||||||||||||||||||    
T  16773884 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 30109308 - 30109385
Alignment:
Q  351 gaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    ||||||||||||||||||||| ||| |||||||| | ||||| |||| ||||||||| |  ||||| |||||||||||    
T  30109308 gaatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggttt 30109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 427
Target Start/End: Original strand, 40461619 - 40461690
Alignment:
Q  357 aacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    ||||||||||||  | |||||||||||||| | ||||||||| |||||||| ||| |||| |||||||||||    
T  40461619 aacctgagaccttgaggagaagcacactctcaagtctcaagttaataccaccagatcaacccaagtgggttt 40461690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 19949621 - 19949671
Alignment:
Q  356 gaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccac 406  Q
    |||||||||| ||| | ||| |||||||||||| |||||||||||||||||    
T  19949621 gaacctgagagctcgaggaggagcacactctagatctcaagtcaataccac 19949671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 26078050 - 26078128
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||  |||||||||| ||| | | ||| |||  |||||||||||| ||||| |||||||||||    
T  26078050 agaatcgaacctgagaccttgaagagaagcatactcccaagtcccaaaccaataccactaggccaacccaagtgggttt 26078128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 30883197 - 30883275
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    ||||| |||| ||||||||  | ||| |||||||||  ||||| |||| |||||||||||||||||| |||||||||||    
T  30883197 agaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggttt 30883275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 34984883 - 34984805
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||| ||||||  | ||| |||||||||  ||||  |||| |||||||||||||||||| |||||||||||    
T  34984883 agaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggttt 34984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 43241681 - 43241759
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactctagg-tctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    ||||| |||||||||||||||| ||   |||||||| | | || ||||||||||||||||||||||| |||||| ||||    
T  43241681 agaattgaacctgagacctcaaggaagggcacactccaagatcccaagtcaataccactagaccaacccaagtgagttt 43241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 3252328 - 3252365
Alignment:
Q  389 gtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  3252328 gtctcaagtcaataccactaggccaacccaagtgggtt 3252365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 3001454 - 3001376
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtttta 429  Q
    |||||||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||| ||||| |||||| ||||||    
T  3001454 aatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggccaacccaagtgagtttta 3001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 35710468 - 35710390
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||| ||||||||||||||| | ||||||| || ||||||||||||| |||| ||| ||||||||||||||||    
T  35710468 agaatcgaacatgagacctcaaagaggaacacactcctaagtctcaagtcaatcccaccagatcaactcaagtgggttt 35710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 12994376 - 12994452
Alignment:
Q  351 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||| |||||||| || ||| |||||||||  ||||| |||||||||||||||||||||||||||| |||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtt 12994452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 19244186 - 19244109
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||    ||| |||||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  19244186 agaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 4060213 - 4060291
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||| ||  | |||||||||||||| |||| ||||  |||||||||||| ||||| |||||||||||    
T  4060213 agaatcgaacctgagatcttgaggagaagcacactctcaggtttcaaaccaataccactaggccaacccaagtgggttt 4060291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 37480152 - 37480074
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||  | ||| |||||||||| ||||| |||| ||||||||| || ||||| |||||||||||    
T  37480152 agaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggttt 37480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 39715069 - 39714991
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||| | ||| |||||||| | ||||| |||||||||||||| |  ||||| |||||||||||    
T  39715069 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggttt 39714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 40416389 - 40416466
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||||||||| || ||| |||| ||||  ||||  ||||||||||||||||| ||||| ||||||||||    
T  40416389 agaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtt 40416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 42327394 - 42327471
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  42327394 agaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 5147719 - 5147755
Alignment:
Q  390 tctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||||||||| ||||||||||    
T  5147719 tctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 426
Target Start/End: Complemental strand, 42860424 - 42860348
Alignment:
Q  351 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||| ||||||||| | ||| |||||||||  |||||||||||||||| ||| || ||||||||||| ||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactcccaggtctcaagtcaatatcaccaggccaactcaagtaggtt 42860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 28846766 - 28846691
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||||| || | ||| |||||||||  ||||| |||||||||||||||||| ||||  |||||||||    
T  28846766 aatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 21213846 - 21213780
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 415  Q
    |||||||||||||||||||||| ||| | |||||| | ||||| |||| ||||||||| ||||||||    
T  21213846 agaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaac 21213780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 29503348 - 29503270
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||  | ||| |||||||||  ||||| |||  |||||||||||| ||||| |||||||||||    
T  29503348 agaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggttt 29503270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 34041588 - 34041665
Alignment:
Q  351 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    ||||| ||||||||||||  | ||| |||||||||| || ||  |||||||||||||||| ||||| |||||||||||    
T  34041588 gaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttt 34041665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 33582050 - 33582014
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct 386  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  33582050 agaatcgaacctgagacctcaaggaggagcacactct 33582014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 426
Target Start/End: Complemental strand, 35916122 - 35916086
Alignment:
Q  390 tctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  35916122 tctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 38854463 - 38854539
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||  | |||| | ||||||| |||||||||||||| |||||||  ||||| ||| |||||||    
T  38854463 aatcgaacctgagaccttgaggagaggtacactctcaggtctcaagtcaaaaccactaagccaacacaaatgggttt 38854539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 14186724 - 14186648
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | ||| ||||||||| ||||| |||| |||||||||||| ||||| ||||||||||    
T  14186724 agaatcgaacctgagaccttgaggaggagcacactccaggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 47454616 - 47454692
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggt 425  Q
    |||||||||||||||||||| | ||| |||||||| | || ||||||| ||||||||||||| |||| |||||||||    
T  47454616 agaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 5499406 - 5499485
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 428  Q
    ||||| |||||| |||||| || ||| |||||||||| || ||||||||||||||||| || ||||| ||||||||||||    
T  5499406 agaatagaaccttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtttt 5499485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 8368798 - 8368876
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||| ||||||||||||| | ||  |||||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  8368798 agaatcaaacctgagacctcgaggatgagcacactaccaggtttcaagtcaataccactaggccaactcaattgggttt 8368876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 37788464 - 37788541
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | ||| ||||||||| |||||  ||||||||||||||| | ||||| ||||||||||    
T  37788464 agaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgggtt 37788541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 19154708 - 19154630
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||  | ||| |||||||||| ||| |||||| |||||| ||||| ||||| ||| |||||||    
T  19154708 agaatcgaacctgagacctttaggaggagcacactctcaggcctcaagccaatacaactaggccaacccaaatgggttt 19154630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 2597223 - 2597296
Alignment:
Q  354 tcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||| ||| |||||||| |||  ||  ||| ||||||||| |||||||| ||||||||||    
T  2597223 tcgaacctgagacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 8051290 - 8051213
Alignment:
Q  351 gaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    ||||||||| ||||||||| | |||||||| ||| | ||||| |||| ||||||||| || ||||| |||||||||||    
T  8051290 gaatcgaacttgagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggttt 8051213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 10682964 - 10683017
Alignment:
Q  372 agagaagcacactcta-ggtctcaagtcaataccactagaccaactcaagtggg 424  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| ||||||||    
T  10682964 agagaagcacactccaaggtctcaagccaataccactagatcaacccaagtggg 10683017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 24481609 - 24481580
Alignment:
Q  398 caataccactagaccaactcaagtgggttt 427  Q
    ||||||||||||||||||||||||||||||    
T  24481609 caataccactagaccaactcaagtgggttt 24481580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 12761587 - 12761523
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 415  Q
    |||||||||||||| ||||| ||| | |||||||  ||||| |||||||||||||| ||||||||    
T  12761587 aatcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaac 12761523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 34622567 - 34622599
Alignment:
Q  395 agtcaataccactagaccaactcaagtgggttt 427  Q
    ||||||||||||||||||||| |||||||||||    
T  34622567 agtcaataccactagaccaacccaagtgggttt 34622599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 33549181 - 33549102
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 428  Q
    |||||||||||||||||||| | ||| |||||||||  ||||| |||| ||||||||| |||||||| ||||||||||||    
T  33549181 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtttt 33549102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 346607 - 346551
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccac 406  Q
    |||||||||| ||||||||| | ||||||||||||| ||||| ||||||||||||||    
T  346607 agaatcgaacatgagacctcgaggagaagcacactccaggtcccaagtcaataccac 346551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 3715529 - 3715463
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 415  Q
    |||||||||| ||||||||| | |||||||| ||||  || |||||||||||||||||||| |||||    
T  3715529 agaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaataccactagcccaac 3715463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Original strand, 22995153 - 22995187
Alignment:
Q  392 tcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||||| |||||||||||||||||||    
T  22995153 tcaagtcaataccaccagaccaactcaagtgggtt 22995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 23793247 - 23793213
Alignment:
Q  392 tcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||||| |||||||||||||||||||    
T  23793247 tcaagtcaataccaccagaccaactcaagtgggtt 23793213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 32439879 - 32439805
Alignment:
Q  353 atcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||| ||||||||| |||||||||||||| | ||||  |||||||||| ||  | |||||||||||||||||    
T  32439879 atcgaacttgagacctcgaagagaagcacactttcaggttccaagtcaatatcatcataccaactcaagtgggtt 32439805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 423
Target Start/End: Complemental strand, 4105126 - 4105051
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaata---ccactagaccaactcaagtgg 423  Q
    |||||||||||||| || || ||| ||||||||| ||||| ||||| |||||   |||||||||||||||||||||    
T  4105126 aatcgaacctgagatcttaaggaggagcacactcctaggtttcaagccaataataccactagaccaactcaagtgg 4105051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 22995077 - 22995109
Alignment:
Q  392 tcaagtcaataccactagaccaactcaagtggg 424  Q
    ||||||||||||||| |||||||||||||||||    
T  22995077 tcaagtcaataccaccagaccaactcaagtggg 22995109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 23793323 - 23793291
Alignment:
Q  392 tcaagtcaataccactagaccaactcaagtggg 424  Q
    ||||||||||||||| |||||||||||||||||    
T  23793323 tcaagtcaataccaccagaccaactcaagtggg 23793291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 16852417 - 16852339
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||| | ||| |||||||||  ||||| |||| |||||||||||| ||||| |||||||||||    
T  16852417 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 19703486 - 19703564
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||  | ||| |||||||||| ||||| |||| |||||||||||| ||||| |||||||||||    
T  19703486 agaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttt 19703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 968439 - 968362
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| | ||| |||||||||  ||||| |||| ||||||||| || ||||||||||||||||    
T  968439 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 3624657 - 3624582
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtggg 424  Q
    |||||||||||||||||||  ||||| |||||||| | ||||| |||| |||||||||||| ||||| ||||||||    
T  3624657 agaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 17727447 - 17727504
Alignment:
Q  372 agagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 428  Q
    |||| |||||||||| |||||||||||||| ||||| |||||||| ||||||||||||    
T  17727447 agaggagcacactctgaggtctcaagtcaacaccacgagaccaacccaagtgggtttt 17727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 18540375 - 18540298
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | |||||| ||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  18540375 agaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 8485076 - 8484998
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||  ||||||||||||||| |||||||||  ||||| ||||  |||||||| || ||||| |||||||||||    
T  8485076 agaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggccaacccaagtgggttt 8484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 18546361 - 18546427
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 415  Q
    |||||||||||||||||||| | ||| ||||  |||| ||||| ||| |||||||||||||||||||    
T  18546361 agaatcgaacctgagacctcgaggaggagcatgctctcaggtcccaaatcaataccactagaccaac 18546427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 34966851 - 34966929
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 429  Q
    |||| ||| ||||||||| ||||| |||||||||  | |||||||| ||||||||  |||||||||||||||| |||||    
T  34966851 aatcaaacttgagacctcgaagagtagcacactcccaagtctcaagccaataccatcagaccaactcaagtggatttta 34966929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 15322 - 15399
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| | ||| |||||||| | ||||| |||| ||||||||| |||||||| ||||||||||    
T  15322 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 9224852 - 9224779
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 422  Q
    |||||||||||||||||||||| |||||||| ||||| || ||||||  ||||||||| |||||||| ||||||    
T  9224852 agaatcgaacctgagacctcaaggagaagcatactctcagatctcaaagcaataccaccagaccaacccaagtg 9224779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 14787335 - 14787408
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 422  Q
    |||||||||||||| ||||  | ||||| |||||||| |||||||||||||||||||||||  |||||||||||    
T  14787335 agaatcgaacctgacaccttgaggagaaacacactctcaggtctcaagtcaataccactaggtcaactcaagtg 14787408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 426
Target Start/End: Complemental strand, 37400354 - 37400274
Alignment:
Q  347 gatagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||| |||||||| || ||| |||||||| | |||||||||| ||||||||| |||||||| ||||| ||||    
T  37400354 gatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaacccaagttggtt 37400274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 429
Target Start/End: Complemental strand, 51814571 - 51814491
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 429  Q
    |||||||||||||||||||  | ||| |||||||||| || ||||||||||||||||  || ||||| |||||||||||||    
T  51814571 agaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtttta 51814491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 16138143 - 16138210
Alignment:
Q  86 cttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgc 153  Q
    ||||||||||| || |||||||||||||||||||| || || ||||||| ||| |||||| |||||||    
T  16138143 cttttcttcaagtgagtgtgccatacattttttatttcattgtctgttcttccaggtaattttgctgc 16138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 25297849 - 25297770
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 428  Q
    |||||| ||||| ||||||| | ||| |||||||||| || ||  |||||||||||||||||||||| ||||||||||||    
T  25297849 agaatcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggtttt 25297770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 2220049 - 2219972
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| | |||||||||||| | ||||  |||| ||||||||| ||| |||| ||||||||||    
T  2220049 agaatcgaacctgagacctcgaggagaagcacactttcaggttccaagccaataccaccagaacaacccaagtgggtt 2219972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 34460945 - 34460986
Alignment:
Q  386 taggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  34460945 taggtctcaagtcaataccactaagccaactcaagtgggttt 34460986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 427
Target Start/End: Complemental strand, 40257479 - 40257398
Alignment:
Q  347 gatagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||| |||| ||||||||| | ||| |||||||||  |||||||||| ||||||||| || ||||| |||||||||||    
T  40257479 gatagaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 16127053 - 16127120
Alignment:
Q  86 cttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgc 153  Q
    |||||||||||||| |||||||| | ||||||||| || || ||||||| ||| |||||| |||||||    
T  16127053 cttttcttcaaatgagtgtgccacatattttttatttcattgtctgttcttccaggtaattttgctgc 16127120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 33731163 - 33731230
Alignment:
Q  89 ttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaat 156  Q
    ||||||||||| |||||||| ||||||||||| || ||||| |||| ||| |||| | ||||||||||    
T  33731163 ttcttcaaatgcgtgtgccacacattttttatttcattatccgttcttcctggtagttttgctgcaat 33731230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 38978967 - 38979018
Alignment:
Q  376 aagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  38978967 aagcacactcctaggtctcaagtcaataccactaggccaacccaaatgggtt 38979018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 29817746 - 29817672
Alignment:
Q  356 gaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 429  Q
    |||||||||| ||  ||||| |||||||||| |||||||||||||||| ||| || ||||| |||||| ||||||    
T  29817746 gaacctgagaacttgaagaggagcacactctcaggtctcaagtcaatatcaccaggccaacccaagtgagtttta 29817672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 17745255 - 17745328
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 422  Q
    |||||||||| ||||||||| | ||| ||||||| || ||||| |||| |||||||||||| ||||| ||||||    
T  17745255 agaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggccaacccaagtg 17745328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 19528326 - 19528403
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | ||| ||||||||| ||| || |||| ||||||||| || ||||| ||||||||||    
T  19528326 agaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 52029936 - 52029993
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccac 406  Q
    |||||||||||||||||||  |  || ||||||||| |||||||||||||||||||||    
T  52029936 agaatcgaacctgagaccttgagaaggagcacactcctaggtctcaagtcaataccac 52029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 7722 - 7802
Alignment:
Q  347 gatagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||||||||| |||||||| || ||| |||||||| | |||||||||| ||||||||| |||||||| ||||| ||||    
T  7722 gatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaacccaagttggtt 7802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 13901822 - 13901746
Alignment:
Q  347 gatagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 422  Q
    |||||||| |||| ||||||||||| ||| | |||||||  |||||||||| |||||||||||||||||| ||||||    
T  13901822 gatagaattgaacttgagacctcaaggaggaacacactcccaggtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 37109350 - 37109427
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  37109350 agaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 405
Target Start/End: Complemental strand, 19112985 - 19112929
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaatacca 405  Q
    |||||||||||||| | ||| ||||| ||||||||| ||||||||||||||||||||    
T  19112985 agaatcgaacctgataactcgaagaggagcacactcctaggtctcaagtcaatacca 19112929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 46545786 - 46545711
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||||| |||||| ||  | ||| |||||||||| |||||||||| |||||||||||| ||||| ||||||||||    
T  46545786 aatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 52254403 - 52254477
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgg 423  Q
    |||||| ||||||| ||||||| ||| |||||||||| |  || |||||||||||||  ||||||||||||||||    
T  52254403 agaatctaacctgaaacctcaaggaggagcacactctcatatcccaagtcaataccatcagaccaactcaagtgg 52254477  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 3780659 - 3780736
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||| |||||| |||||||||  ||||| | ||| | |||||||||||||||||||| ||||||| || ||||||||    
T  3780659 agaattgaacctaagacctcaagaagaagaatactttcaggtctcaagtcaataccaccagaccaattctagtgggtt 3780736  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 43623443 - 43623516
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtg 422  Q
    ||||||||||||||||| |||| ||| |||||||| |  | ||||||||||||| |||||||| ||| ||||||    
T  43623443 agaatcgaacctgagacttcaaggaggagcacactccctgatctcaagtcaatatcactagactaacccaagtg 43623516  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 47044794 - 47044717
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| | ||| |||| ||||| || || |||||||||||||| || ||||  ||||||||||    
T  47044794 agaatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 306311 - 306379
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaa 419  Q
    ||||||| ||||||| | |||||| | |||||||| || || ||| |||||||||||||||||||||||    
T  306311 aatcgaatctgagactttaaagaggatcacactctcagatcccaaatcaataccactagaccaactcaa 306379  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 19229207 - 19229283
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||||||||||| | ||| |||||| |||| ||| || | ||||||||| || ||||| ||| ||||||    
T  19229207 agaatcgaacctgagacctcgaggaggagcacattctaagtcccaggccaataccaccaggccaacccaaatgggtt 19229283  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 21660145 - 21660221
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||| ||||||||| | ||  |||||||||  || ||||||||||||||||| |||||||| ||||| |||||    
T  21660145 aatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21660221  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 21668909 - 21668985
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 427  Q
    |||||||| ||||||||| | ||  |||||||||  || ||||||||||||||||| |||||||| ||||| |||||    
T  21668909 aatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21668985  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 426
Target Start/End: Original strand, 41632 - 41709
Alignment:
Q  350 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    ||||| |||||||||||||| | ||| |||| ||||| || ||||||| |||||||||||| ||||| ||||||||||    
T  41632 agaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 24128 - 24053
Alignment:
Q  352 aatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 426  Q
    |||||||||||| || || ||||| ||||||||| || ||| ||||||||||||| ||| ||||| ||||||||||    
T  24128 aatcgaacctgacacttcgaagaggagcacactcctaagtcccaagtcaataccattaggccaacccaagtgggtt 24053  T

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