View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_high_9 (Length: 391)
Name: NF2900_high_9
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 2151783 - 2152119
Alignment:
| Q |
17 |
acacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaactcnnnnnnn-gttccgacgagtttccacaatgtctctt |
115 |
Q |
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| T |
2151783 |
acacacatcgatcactttgagcattgttaatttgattttcttttcttaattggaatgggaactcaaaaaaaagatccgacgagtttccacaatgtctctt |
2151882 |
T |
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| Q |
116 |
gtcacaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt--- |
212 |
Q |
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| T |
2151883 |
gtcacacattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagtggt |
2151982 |
T |
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| Q |
213 |
------ggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgtta |
306 |
Q |
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| T |
2151983 |
gcttgaggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgtta |
2152082 |
T |
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| Q |
307 |
ctcgtccctaatgtgttaatttggattttttatatat |
343 |
Q |
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| T |
2152083 |
ctcgtccctaatgtgttaatttggattatatatatat |
2152119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
119 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
208 |
Q |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 2146373 - 2146433
Alignment:
| Q |
17 |
acacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaa |
77 |
Q |
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| T |
2146373 |
acacacatcgatcactttgattattgctaatttgattttcttctcttaattggaaagggaa |
2146433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
126 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
212 |
Q |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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