View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2900_low_1 (Length: 935)
Name: NF2900_low_1
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 249 - 919
Target Start/End: Complemental strand, 50391570 - 50390900
Alignment:
| Q |
249 |
cgtgtcttccctttttagatagatatagaaaatatgcatgacaacatattaaatttcatatttacacttttttaagggaaaatttaatatttacacttaa |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391570 |
cgtgtcttccctttttagatagatatagaaaatatgcatgacaacatattaaatttcatatttacacttttttaagggaaaatttaatatttacacttaa |
50391471 |
T |
|
| Q |
349 |
ttgtggatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctgccaactttgtcaccttcttctg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391470 |
ttgtggatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctgccaactttgtcaccttcttctg |
50391371 |
T |
|
| Q |
449 |
tctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataag |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391370 |
tctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataag |
50391271 |
T |
|
| Q |
549 |
gttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctt |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391270 |
gttaacaacagcaccaaagaaagttgcagctgcaataataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctt |
50391171 |
T |
|
| Q |
649 |
tgctttccaagtgcttccaattgtttcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatac |
748 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391170 |
tgctttccaagtgcttccaattgtttctcagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatac |
50391071 |
T |
|
| Q |
749 |
ttcctaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataat |
848 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391070 |
ttccaaaattatacaaagttgcataatatttaagtccaaagagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataat |
50390971 |
T |
|
| Q |
849 |
aactgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaaga |
919 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50390970 |
aactgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaaga |
50390900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 427 - 919
Target Start/End: Complemental strand, 50394666 - 50394174
Alignment:
| Q |
427 |
ccaactttgtcaccttcttctgtctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttc |
526 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50394666 |
ccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttc |
50394567 |
T |
|
| Q |
527 |
ttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaagataacttgaaacaatcaacgccaacacaatt |
626 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50394566 |
tagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaatt |
50394467 |
T |
|
| Q |
627 |
caattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatat |
726 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50394466 |
caattcatgcccttctattctatgctttccaagtgcttccaattgtttcttagcctctttgtcatacaaatgaccagtgatcttcacattaagcacatat |
50394367 |
T |
|
| Q |
727 |
aagccaattggacttgttatacttcctaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgag |
826 |
Q |
| |
|
|| |||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50394366 |
aatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgag |
50394267 |
T |
|
| Q |
827 |
caccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaaga |
919 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
50394266 |
caccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtccaacacatgagacaaaga |
50394174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 354 - 919
Target Start/End: Complemental strand, 50386318 - 50385755
Alignment:
| Q |
354 |
gatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctg-ccaactttgtcaccttcttctgtctt |
452 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||| ||| |||||||| | ||||| ||||| || |||||||||||| |||| |||||||| |
|
|
| T |
50386318 |
gatctatgatctataatatcgtccttaaccatttgtcctaattccaagttgtcgcaacatgc---tgctgttgaccaactttgtcatcttcctctgtctt |
50386222 |
T |
|
| Q |
453 |
tcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggtta |
552 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
50386221 |
ttctacgttctttacctccaccatttcagcttcttccctatatctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaa |
50386122 |
T |
|
| Q |
553 |
acaacagcaccaaagaaagttgcagctgcaatgataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgct |
652 |
Q |
| |
|
|||||||||||||| || |||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50386121 |
acaacagcaccaaaaaatgttgcagctgtgataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgct |
50386022 |
T |
|
| Q |
653 |
ttccaagtgcttccaattgtttcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcc |
752 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||| || |||||| |
|
|
| T |
50386021 |
ttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaaggggacttgctacacttcc |
50385922 |
T |
|
| Q |
753 |
taaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataact |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
50385921 |
aaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcact |
50385822 |
T |
|
| Q |
853 |
gaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaaga |
919 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
50385821 |
gaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtccaacacatgagacaaaga |
50385755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 50391817 - 50391627
Alignment:
| Q |
1 |
gtgtttggatcaagtataagtggtgggaacttacactttgaggggaagattattggttttcaagtgtgagtggttagtcattcataagttcataactaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391817 |
gtgtttggatcaagtataagtggtggaaacttacactt-gaggggaatattattggttttcaagtgtgagtggttagtcattcataagttcataactaag |
50391719 |
T |
|
| Q |
101 |
tttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaatgagatttcatagtttttaattattaatttatacaattgt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391718 |
tttttaagtaatgatttaaatttctattgtagtggtgctgttcctattttaatgagatttcatagtttttaattattaatttatacaattgt |
50391627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 674 - 893
Target Start/End: Complemental strand, 50408029 - 50407810
Alignment:
| Q |
674 |
tcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcata |
773 |
Q |
| |
|
||||||||||||||||||| |||||||||| || | |||||||| | |||||| ||||||||||| | || | || || || |||||||| ||| |
|
|
| T |
50408029 |
tcttagcttctttgtcatataaatgaccagcgaccctaacattaagaaaatataatccaattggactagctaccccaccaaagttcatcaaagttgaata |
50407930 |
T |
|
| Q |
774 |
atatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgt |
873 |
Q |
| |
|
|||||| | ||||| | || || || |||||||||| || |||||||| ||||||||||||||||| || || |||||||| | ||||| || | | |
|
|
| T |
50407929 |
atatttcaacccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagcaaaatagatgccattt |
50407830 |
T |
|
| Q |
874 |
ggcacatcaaatgctatcaa |
893 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
50407829 |
tgcacatcaaaggctatcaa |
50407810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 20755024 - 20755082
Alignment:
| Q |
101 |
tttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaatgagatt |
159 |
Q |
| |
|
||||||| |||| ||||||||| ||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
20755024 |
tttttaattaataatttaaattcctaccgtagtggtgttcttcctattttaatgagatt |
20755082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 533
Target Start/End: Original strand, 19712372 - 19712425
Alignment:
| Q |
480 |
agcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcct |
533 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
19712372 |
agcttcctctctgaacttcttgtatatgtcacctttataaaactctctagtcct |
19712425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 588 - 728
Target Start/End: Complemental strand, 34297438 - 34297297
Alignment:
| Q |
588 |
aatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctt-tccaagtgcttccaattgtttcttagcttcttt |
686 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||||||| |||| || | ||| | || |||||||||||||||||| || |||||||| || |
|
|
| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgccttttttttcctacgttgtccaagtgcttccaattgattattagcttcctt |
34297339 |
T |
|
| Q |
687 |
gtcatacaaatgaccagtgatcgccacattaagcacatataa |
728 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
34297338 |
gtcatacaaatgaccagtgattgtaacattaagcacatataa |
34297297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 848
Target Start/End: Complemental strand, 41335047 - 41334953
Alignment:
| Q |
754 |
aaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataat |
848 |
Q |
| |
|
||||| |||||||||| ||| ||||| | |||||||| ||| ||||| || ||||| | || ||||||||||| ||||||||||| || ||||| |
|
|
| T |
41335047 |
aaattgtacaaagttgaatagtatttcaatccaaaaatttcggatatgattgcaaacatcaatggccattgagctccaaaacaaaaaccaataat |
41334953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 18721284 - 18721220
Alignment:
| Q |
120 |
atttctattgtactggtgttgttcctattttaatgagatttca-tagtttttaattattaattta |
183 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| | || |||||||||| ||||||| |
|
|
| T |
18721284 |
atttctattgtagtgaggttgttcctattttaatgagatttaactattttttaattaataattta |
18721220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 28013490 - 28013557
Alignment:
| Q |
93 |
taactaagtttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaatgagattt |
160 |
Q |
| |
|
||||||| ||||||| |||| | ||||||| |||||||| || ||||||| | ||||||||||||||| |
|
|
| T |
28013490 |
taactaattttttaattaataaattaaattcctattgtaatgatgttgtttcaattttaatgagattt |
28013557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 26054769 - 26054827
Alignment:
| Q |
94 |
aactaagtttttaagtaatgatttaaatttctattgtactggtgttgttcctattttaa |
152 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
26054769 |
aactaaatttttaattaataatttaaatttccattatagcggtgttgttcctattttaa |
26054827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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