View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_11 (Length: 386)
Name: NF2900_low_11
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 46 - 382
Target Start/End: Original strand, 1869349 - 1869684
Alignment:
| Q |
46 |
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga |
145 |
Q |
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| T |
1869349 |
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga |
1869448 |
T |
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| Q |
146 |
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
245 |
Q |
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| T |
1869449 |
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
1869547 |
T |
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| Q |
246 |
agagcattatgtaccttacaaatgatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt |
345 |
Q |
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| T |
1869548 |
agagcattatgtaccttacaaatgatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt |
1869647 |
T |
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| Q |
346 |
gggtcagtattttgagcaagatacccctttgcttctc |
382 |
Q |
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| T |
1869648 |
gggtcagtattttgagcaagatacccttttgtttctc |
1869684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 1916736 - 1916830
Alignment:
| Q |
269 |
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagca |
363 |
Q |
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| T |
1916736 |
gatggtgatgtcaaggatggattttccaaaattcaagactctactgttaactactgaaagatgaagattttcaaggtaggtcagtattttgagca |
1916830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 17488418 - 17488519
Alignment:
| Q |
269 |
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
368 |
Q |
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| T |
17488418 |
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata |
17488517 |
T |
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| Q |
369 |
cc |
370 |
Q |
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| T |
17488518 |
cc |
17488519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 17564796 - 17564695
Alignment:
| Q |
269 |
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
368 |
Q |
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|||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
17564796 |
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata |
17564697 |
T |
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| Q |
369 |
cc |
370 |
Q |
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|| |
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| T |
17564696 |
cc |
17564695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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