View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_12 (Length: 360)
Name: NF2900_low_12
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 55 - 348
Target Start/End: Complemental strand, 18252159 - 18251866
Alignment:
| Q |
55 |
aatggaggcttagatggttacattgtctttttcacaacaaatactaaattaagacatgttattggaaaagtatctaaataaagattctactttgtatact |
154 |
Q |
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| T |
18252159 |
aatgaaggcttagatggttacattgtctttttcacaacaaatactaaattgagacatgttattggaaaagtatctaaataaagattctactttgtatgct |
18252060 |
T |
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| Q |
155 |
atatagtttgtagctagtgtttaccctccccttctcactaggaaatgacaccggtgatttggagtttggtcggaaagcaaattcagtttctcttgaacaa |
254 |
Q |
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| T |
18252059 |
atatagtttgtagctagtgtttaccctctccttctcactagaaaatgacaccggtgatttggagtttggtcagaaagcaaactcagtttctcttgaacaa |
18251960 |
T |
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| Q |
255 |
tttctcctcgatgctcattaaccatttgtatctaattgcttggttattttatatatccatgtcttttctctaccactcttgttatttcatctca |
348 |
Q |
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| T |
18251959 |
tttctcctcgatacttattaaccacttgtatctaattgtttggttattttatatatccacgtcttttctctaccactcttgttatttcttctca |
18251866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 18257077 - 18257105
Alignment:
| Q |
18 |
atgatgatcgtggtcattctaacaaatgc |
46 |
Q |
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| T |
18257077 |
atgatgatcgtggtcattctaacaaatgc |
18257105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 31221611 - 31221543
Alignment:
| Q |
64 |
ttagatggttacattgtctttttcacaac-aaatactaaattaagacatgttattggaaaagtatctaa |
131 |
Q |
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| T |
31221611 |
ttagatggttagattgtctttttcagaacaaaatactagaatgagacatgctattggaaaagtatctaa |
31221543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 31246188 - 31246112
Alignment:
| Q |
64 |
ttagatggttacattgtctttttcacaacaaa-tactaaattaagacatgttattggaaaagtatctaaataaagat |
139 |
Q |
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| T |
31246188 |
ttaggtggctacattgtcttttacgtaacaaaatactaaattgagatatgttactgcaaaagcatctaaataaagat |
31246112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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