View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2900_low_13 (Length: 345)

Name: NF2900_low_13
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2900_low_13
NF2900_low_13
[»] chr3 (11 HSPs)
chr3 (143-232)||(6939308-6939397)
chr3 (18-80)||(6939021-6939083)
chr3 (154-266)||(6526797-6526909)
chr3 (154-266)||(6848377-6848489)
chr3 (80-116)||(6526944-6526980)
chr3 (77-116)||(6558187-6558226)
chr3 (80-119)||(6789001-6789040)
chr3 (154-228)||(6558078-6558152)
chr3 (80-109)||(6848532-6848561)
chr3 (23-51)||(6549838-6549866)
chr3 (289-317)||(6943671-6943699)
[»] scaffold0425 (2 HSPs)
scaffold0425 (154-266)||(11504-11616)
scaffold0425 (80-116)||(11651-11687)
[»] chr1 (1 HSPs)
chr1 (246-329)||(49618971-49619054)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 6939308 - 6939397
Alignment:
Q  143 tgaaaactggagtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939308 tgaaaactggagtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcat 6939397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 6939021 - 6939083
Alignment:
Q  18 agtgatgccttgcagaatggttctgtgttacattgattgattataacaggccagtcttattga 80  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939021 agtgatgccttccagaatggttctgtgttacattgattgattataacaggccagtcttattga 6939083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 6526909 - 6526797
Alignment:
Q  154 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag 253  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||||||||| |||||   ||| ||| |  ||||||| |||    
T  6526909 gtaaaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcatgtttcctgggaagacacaagaag 6526810  T
Q  254 aaaagcagacaat 266  Q
    |||| ||||||||    
T  6526809 aaaaacagacaat 6526797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 6848489 - 6848377
Alignment:
Q  154 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag 253  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| || || || |||||||||||| ||||||  ||| ||| |  ||||||| |||    
T  6848489 gtaaaaggccacatggcatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcgtgtttcctgggaagacacaagaag 6848390  T
Q  254 aaaagcagacaat 266  Q
    |||| ||||||||    
T  6848389 aaaaacagacaat 6848377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 6526980 - 6526944
Alignment:
Q  80 acaacaaagtggcatgtcattcaattttttatcactt 116  Q
    |||||||||||||||||||||||||||||||||||||    
T  6526980 acaacaaagtggcatgtcattcaattttttatcactt 6526944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 6558226 - 6558187
Alignment:
Q  77 ttgacaacaaagtggcatgtcattcaattttttatcactt 116  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  6558226 ttgacaacaaggtggcatgtcattcaattttttatcactt 6558187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 6789040 - 6789001
Alignment:
Q  80 acaacaaagtggcatgtcattcaattttttatcacttctt 119  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  6789040 acaacaaagtggcatgtcattcaattttttatgacttctt 6789001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 6558152 - 6558078
Alignment:
Q  154 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctc 228  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| | || || || ||| |||||||| |||||    
T  6558152 gtaaaaggccacatgacatcctcaccatgtaatttgttgatgcaagtaattcatcggctttttttctcaagtctc 6558078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 6848561 - 6848532
Alignment:
Q  80 acaacaaagtggcatgtcattcaatttttt 109  Q
    ||||||||||||||||||||||||||||||    
T  6848561 acaacaaagtggcatgtcattcaatttttt 6848532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 6549866 - 6549838
Alignment:
Q  23 tgccttgcagaatggttctgtgttacatt 51  Q
    |||||||||||||||||||||||||||||    
T  6549866 tgccttgcagaatggttctgtgttacatt 6549838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 6943671 - 6943699
Alignment:
Q  289 tatgggacacaaagtcagaagaataacaa 317  Q
    |||||||||||||||||||||||||||||    
T  6943671 tatgggacacaaagtcagaagaataacaa 6943699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 11616 - 11504
Alignment:
Q  154 gtaaaaggccacatgacatcctcaccgtgtaattgattgatgcaatttatccagcgccttcttttctcatgtctcgcattttctgagccgacacaaaaag 253  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||||||||| |||||   ||| ||| |  ||||||| |||    
T  11616 gtaaaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttcttttctcaagtctcatgtttcctgggaagacacaagaag 11517  T
Q  254 aaaagcagacaat 266  Q
    |||| ||||||||    
T  11516 aaaaacagacaat 11504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 11687 - 11651
Alignment:
Q  80 acaacaaagtggcatgtcattcaattttttatcactt 116  Q
    |||||||||||||||||||||||||||||||||||||    
T  11687 acaacaaagtggcatgtcattcaattttttatcactt 11651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 49618971 - 49619054
Alignment:
Q  246 acaaaaagaaaagcagacaattaatgttaaatagactaagaattatgggacacaaagtcagaagaataacaaggaggaattgtg 329  Q
    |||||||||||||||||||||||  ||||| |||||| | ||||||| |||||||||||| ||||| ||||  || ||||||||    
T  49618971 acaaaaagaaaagcagacaattatcgttaattagactgaaaattatgcgacacaaagtcataagaagaacagagaagaattgtg 49619054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University