View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_14 (Length: 316)
Name: NF2900_low_14
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_14 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 15497007 - 15496725
Alignment:
| Q |
17 |
aatagcaatgtcatagtcctataatttttagggaggtgatatggtggcattttattgttttctagcaagagaatattccttttgagagatagtacaatta |
116 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
15497007 |
aatagcaatgtcatagtactataatttttagggaggtgatatggtggcattttattgttttctagcaagagaatattccttctgagagatagtacagtta |
15496908 |
T |
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| Q |
117 |
tattctgtatattaatatataaaaatcaactttagtaaaaacgcaaatcctaaatttttctctaggaaaacatctctgacctctctctagatctccgccg |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||| ||| |
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| T |
15496907 |
tattctgtatattaatatataaaaatcaacttttgtaaaaacgcaaatcctaaatttctctttggaaaaacatctctgacctctctctagatctccaccg |
15496808 |
T |
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| Q |
217 |
tcaccctccttccttccaatccaacctatatccgccgcgatgtagattcaatcgttggtggtgcgatgattggcttaggccgt |
299 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
15496807 |
tcaccctccttccttccaatccagcctatatccgccgcgatgtagattcaatcgttggtgatgcgatgattggcttaagccgt |
15496725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 15497069 - 15497004
Alignment:
| Q |
68 |
ttattgttttctagcaagagaatattccttttgagagatagtacaattatattctgtatattaata |
133 |
Q |
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| T |
15497069 |
ttattgttttttagaaagagaatattccttttgagagattgtacaattatattatgtatattaata |
15497004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 40681865 - 40681725
Alignment:
| Q |
159 |
gcaaatcctaaatttttctctaggaaaacatctctgacctctctctagatctccgccgtcaccctccttccttccaatccaacctatatccgccgcgatg |
258 |
Q |
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| T |
40681865 |
gcaaaccctaaatttctctctgtaaaaacatctatgacctctctctagatctccaccgtcaccctccttccttccaatccaacctatatccgccgcgatg |
40681766 |
T |
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| Q |
259 |
tagattcaatcgttggtggtgcgatgattggcttaggccgt |
299 |
Q |
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| T |
40681765 |
tagattcaatcgttggtggtgcgatgattggcttaggccgt |
40681725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 152 - 299
Target Start/End: Complemental strand, 6706480 - 6706333
Alignment:
| Q |
152 |
taaaaacgcaaatcctaaatttttctctaggaaaacatctctgacctctctctagatctccgccgtcaccctccttccttccaatccaacctatatccgc |
251 |
Q |
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|||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
6706480 |
taaaaatgcaaaccctaaatttctctctgtagaaacatctctgacctctctctagatctccaccgtcaccctccttccttccaatctaacctatatccgc |
6706381 |
T |
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| Q |
252 |
cgcgatgtagattcaatcgttggtggtgcgatgattggcttaggccgt |
299 |
Q |
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| T |
6706380 |
cgcgatgtagattcaatcgttggtggtgcgatgattggcttaggccgt |
6706333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 40900852 - 40900749
Alignment:
| Q |
189 |
tctctgacctctctctagatctccgccgtcaccctccttccttccaatccaacctatatccgccgcgatgtagattcaatcgttggtggtgcgatgattg |
288 |
Q |
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|||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |
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| T |
40900852 |
tctctgacctctctctagatctccactatcaccctcctcccttccaatccaacctatattcgccacgatgtagattcaatcgttgatggtgcgatgattg |
40900753 |
T |
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| Q |
289 |
gctt |
292 |
Q |
| |
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|||| |
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| T |
40900752 |
gctt |
40900749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 21590071 - 21590184
Alignment:
| Q |
189 |
tctctgacctctctctagatctccgccgtcaccctccttccttccaatccaacctatatccgccgc-gatgtagattcaatcgttggtggtgcgatgatt |
287 |
Q |
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|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |
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| T |
21590071 |
tctctgtcctctctctagatctccattgtcaccctcctcccttccaatccaacctatatccgctgctgatgtagattcaatcgttggtggtgcgatgact |
21590170 |
T |
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| Q |
288 |
ggcttaggccgttc |
301 |
Q |
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||||| ||| |||| |
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| T |
21590171 |
ggcttgggctgttc |
21590184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 2239433 - 2239330
Alignment:
| Q |
189 |
tctctgacctctctctagatctccgccgtcaccctccttccttccaatccaacctatatccgccgcgatgtagattcaatcgttggtggtgcgatgattg |
288 |
Q |
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|||||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |
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| T |
2239433 |
tctctgacctctctctagatctccaccgtcatccttttgcctttcaatccaacctatatccgtcgtgatgtagattcaaccgttggtggtgcgatgattg |
2239334 |
T |
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| Q |
289 |
gctt |
292 |
Q |
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|||| |
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| T |
2239333 |
gctt |
2239330 |
T |
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Target: scaffold0092 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 23845 - 23751
Alignment:
| Q |
205 |
agatctccgccgtcaccctccttccttccaatccaacctatatccgccgcgatgtagattcaatcgttggtggtgcgatgattggcttaggccgt |
299 |
Q |
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|||||| | ||| ||||||||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||| |||||| |
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| T |
23845 |
agatcttcaccggcaccctccttccttccaatccaacctatatccgtcgtgatatagatttaatcgttggtggtgcgatgattggctttggccgt |
23751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 22335032 - 22335120
Alignment:
| Q |
191 |
tctgacctctctctagatctccgccgtcaccctccttccttccaatccaacctatatccgccgcgatgtagattcaatcgttggtggtg |
279 |
Q |
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|||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
22335032 |
tctgacctctctctagatctccaccgtcgccctcctccctcccaatccaacctatatcctccgtgatgtagatataatcgttggtggtg |
22335120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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