View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_15 (Length: 271)
Name: NF2900_low_15
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 34186686 - 34186423
Alignment:
| Q |
1 |
gcaagtgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctct |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186686 |
gcaattgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctct |
34186587 |
T |
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| Q |
101 |
tcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186586 |
tcactctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgc |
34186487 |
T |
|
| Q |
201 |
ttgaaagagataattttttgccttcaaatccttcagcttcaactcctccaatgttttcttctca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186486 |
ttgaaagagataattttttgccttcaaatccttcagcttcaactcctccaatgttttcttctca |
34186423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 11847771 - 11847703
Alignment:
| Q |
172 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
240 |
Q |
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| T |
11847771 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
11847703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 518551 - 518305
Alignment:
| Q |
16 |
cgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctcttcactctagcagtcc |
115 |
Q |
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| T |
518551 |
cgagcaaaatagtcgataattgattctccattcttcatctgtaaaatctaccagtcacgtcacagggcctgaagctgtgctcgcttccctctagcagtga |
518452 |
T |
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| Q |
116 |
cttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaaagagataatt |
215 |
Q |
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||||||||| ||| || || ||| || ||||||||||| ||| | || || | |||||||||||||||| |||||||||||||||||||||| | ||| |
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| T |
518451 |
cttggtattactttttcaaggaa--cctgatctccttcgatgtctcgttttttaaaattgtttcaagcacaactcgatcaattgcttgaaagaggtgatt |
518354 |
T |
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| Q |
216 |
ttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
263 |
Q |
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| T |
518353 |
ttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
518305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 367100 - 367356
Alignment:
| Q |
6 |
tgtgagggtacgagcaaagtagtcgttaacagattctccacttttcatcgacaaaatttcccaatcgcgtcttaaggcctgaagctgtgctctcttcact |
105 |
Q |
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| T |
367100 |
tgtgagagttcgagcaaaatagtcattaattgattctccattcttcatctgtaaaatctaccagtcacgtcacagggcctgaagttgagctcgcttccct |
367199 |
T |
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| Q |
106 |
ctagcagtcccttggtatttcttctttaaagaatcccaaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaa |
205 |
Q |
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|||||||| ||||||||| ||| || || ||| || ||||||||||| ||| | || || | |||| ||||||||||| |||||||||||||||||| |
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| T |
367200 |
ctagcagtgacttggtattactttttcaaggaa--cctgatctccttcgatgtctcgttttttaaaattatttcaagcacaactcgatcaattgcttgaa |
367297 |
T |
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| Q |
206 |
agagataattttttgcctt-caaatccttcagcttcaactcctccaatgttttcttctc |
263 |
Q |
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|||| | | |||||||||| ||||| | || ||| | ||| ||||||||||||||||| |
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| T |
367298 |
agaggtgactttttgccttaaaaatcttacaactttagctcatccaatgttttcttctc |
367356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 14864521 - 14864448
Alignment:
| Q |
169 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttcaa |
242 |
Q |
| |
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||||| ||||| || ||| ||||||||||||||||| | | |||||| |||||||| | ||||||||||||||| |
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| T |
14864521 |
agaatggtttcgagaacaactcgatcaattgcttgatacaaataattctttgcctttagatccttcagcttcaa |
14864448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 26545396 - 26545341
Alignment:
| Q |
169 |
agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt |
224 |
Q |
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|||||||||||||||||| | ||| ||||||||||||||| |||||||||||||| |
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| T |
26545396 |
agaattgtttcaagcacatcacgagaaattgcttgaaagaggtaattttttgcctt |
26545341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 15592637 - 15592569
Alignment:
| Q |
172 |
attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc |
240 |
Q |
| |
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||||||||||||||| | ||| |||||||||||| || |||||||| |||||||| ||| ||| |||| |
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| T |
15592637 |
attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc |
15592569 |
T |
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