View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2900_low_17 (Length: 249)

Name: NF2900_low_17
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2900_low_17
NF2900_low_17
[»] chr3 (1 HSPs)
chr3 (1-233)||(3043996-3044229)
[»] chr8 (2 HSPs)
chr8 (114-163)||(29749277-29749326)
chr8 (123-195)||(42822650-42822722)
[»] chr5 (1 HSPs)
chr5 (134-178)||(33534631-33534675)
[»] chr2 (1 HSPs)
chr2 (134-178)||(16866673-16866717)
[»] chr6 (1 HSPs)
chr6 (134-178)||(30530003-30530047)
[»] chr4 (1 HSPs)
chr4 (114-162)||(25402896-25402944)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3043996 - 3044229
Alignment:
Q  1 caatgatcagacctgttacctgcaagaacaaagaaacagaaaatagttaatagaagcgaaatttcaacaaacagcatt-gttctggaatacgctatttat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  3043996 caatgatcagacctgttacctgcaagaacaaagaaacagaaaacggtttatagaagcgaaatttgaacaaacagcaatcgttctggaatgcgctatttat 3044095  T
Q  100 tataaaatgtttcgaatagcagttatagcagcgttatagcactcttgcatagcagaatttgaaccaaccgttattttctactgtctgcaattgacagcaa 199  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3044096 tataaaatgtttcgaatagcagttatagcggcgttatagcactcttgcatagcagaatttgaaccaaccgttattttctacggtctgcaattgacagcaa 3044195  T
Q  200 tgactagaagaacaatctagatcctgtatggatt 233  Q
    |||||||| |||||||||| ||||||||| ||||    
T  3044196 tgactagatgaacaatctaaatcctgtattgatt 3044229  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 29749277 - 29749326
Alignment:
Q  114 aatagcagttatagcagcgttatagcactcttgcatagcagaatttgaac 163  Q
    ||||||||||||||||||| ||||||||| | |||||||| |||||||||    
T  29749277 aatagcagttatagcagcgctatagcactgtagcatagcaaaatttgaac 29749326  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 42822650 - 42822722
Alignment:
Q  123 tatagcagcgttatagcactcttgcatagcagaatttgaaccaaccgttattttctactgtctgcaattgaca 195  Q
    |||||| ||| ||||||||| ||||||||  |||||||||| ||| | |||||||  || |||||||||||||    
T  42822650 tatagcggcgctatagcactgttgcatagtggaatttgaacaaactgatattttccgctatctgcaattgaca 42822722  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 33534675 - 33534631
Alignment:
Q  134 tatagcactcttgcatagcagaatttgaaccaaccgttattttct 178  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||    
T  33534675 tatagcactgttgcgtagcagaatttgaaccaaccgctattttct 33534631  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 16866673 - 16866717
Alignment:
Q  134 tatagcactcttgcatagcagaatttgaaccaaccgttattttct 178  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||    
T  16866673 tatagcactgttgcgtagcagaatttgaaccaaccgctattttct 16866717  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 30530047 - 30530003
Alignment:
Q  134 tatagcactcttgcatagcagaatttgaaccaaccgttattttct 178  Q
    ||||||||| |||| ||||||||||||||| ||||| ||||||||    
T  30530047 tatagcactgttgcgtagcagaatttgaacaaaccgctattttct 30530003  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 25402896 - 25402944
Alignment:
Q  114 aatagcagttatagcagcgttatagcactcttgcatagcagaatttgaa 162  Q
    ||||||||||||||| | | |||||||||||| | ||||||||||||||    
T  25402896 aatagcagttatagcggtgatatagcactcttacgtagcagaatttgaa 25402944  T

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