View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_19 (Length: 239)
Name: NF2900_low_19
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 32 - 239
Target Start/End: Complemental strand, 33164385 - 33164178
Alignment:
| Q |
32 |
gtgctgaaaggaagttttaacaagtgaccgtctgccactgcctgcagtggaacaaaagcccaaatgaggctataattacatttgaatcagttaagctaat |
131 |
Q |
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| T |
33164385 |
gtgctgaaaggaagttttaacaaatgaccgcctgccactgcctgcagtggaacaaaagcccaaatgaagctataattacatttgaatcagctaagctaat |
33164286 |
T |
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| Q |
132 |
gtaaaattattaaaaagagacaaaatgaagttacagaaacactaatagaagatgacacaaaatccaatcaatagatcatacagtatgatgatccaaaata |
231 |
Q |
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| T |
33164285 |
gtaaaattattaaaaagagacaaaatgaagttacagaaacactaatagaagatgacacaaaatccaatcaatagatcatacagtatgatgatccaaaata |
33164186 |
T |
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| Q |
232 |
gctctttt |
239 |
Q |
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|||||||| |
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| T |
33164185 |
gctctttt |
33164178 |
T |
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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 46161514 - 46161641
Alignment:
| Q |
31 |
agtgctgaaaggaagttttaacaagtgaccgtctgccactgcctgcagtggaacaaaagcccaaatgaggctataattacatttgaatcag-ttaagcta |
129 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| || |||||||||||||| |||||||||| || | |||||| |
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| T |
46161514 |
agtgctgaaaggaagttttaacaagtgaccgcctgctactgcctgcagtggaatgaaaaccacaatgaggctataataacatttgaataagctaaagcta |
46161613 |
T |
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| Q |
130 |
atgtaaaattattaaaaagagacaaaat |
157 |
Q |
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| T |
46161614 |
atgtacaattataaaaaggagacaaaat |
46161641 |
T |
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