View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_2 (Length: 546)
Name: NF2900_low_2
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 2 - 529
Target Start/End: Complemental strand, 11329452 - 11328931
Alignment:
| Q |
2 |
ggagaacaaaaacaacgggatgatgcttataaagctgcgaaaaagaaaactagcagcatatatgacgataagttcaatgatgtcccttccacggaaaaga |
101 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11329452 |
ggagaacaaaaacgacgggatgatacttataaagctgcgaaaaagaaaactagcagcatatatgacgataagtccaatgatgtcccttccacggaaaaga |
11329353 |
T |
|
| Q |
102 |
aaatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329352 |
aaatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagct |
11329253 |
T |
|
| Q |
202 |
tcaaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaa |
301 |
Q |
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| T |
11329252 |
taaaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaa |
11329153 |
T |
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| Q |
302 |
tttaagaagcccaagaagaaaaagtccttccgaaagaaagataagctggatattattgcccttgaagctgaagctgaagctgtctcttcaggattgggtg |
401 |
Q |
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| T |
11329152 |
tttaagaagcccaagaagaaaaagtccttccgaaagaaagataagctggatattattgcccttgaagctgaa------gctgtctcttcaggattgggtg |
11329059 |
T |
|
| Q |
402 |
ttggtgaccttggttgtcagaaagatgcaaagaggcaagccatcaaagacgaacaggaaagattgacgactgaaatgagaaataatgcttaccggtctgc |
501 |
Q |
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| T |
11329058 |
ttggtgaccttggttgtcggaaagatgcaaagaggcaagccatcaaagacgaacaggaaagattgacaactgaaatgagaaataatgcttaccggtctgc |
11328959 |
T |
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| Q |
502 |
ttatgctaaagcagatgaagcctctgaa |
529 |
Q |
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| T |
11328958 |
ttatgctaaagcagatgaagcctctgaa |
11328931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 2 - 529
Target Start/End: Complemental strand, 11487473 - 11486952
Alignment:
| Q |
2 |
ggagaacaaaaacaacgggatgatgcttataaagctgcgaaaaagaaaactagcagcatatatgacgataagttcaatgatgtcccttccacggaaaaga |
101 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11487473 |
ggagaacaaaaacgacgggatgatacttataaagctgcgaaaaagaaaactagcagcatatatgacgataagtccaatgatgtcccttccacggaaaaga |
11487374 |
T |
|
| Q |
102 |
aaatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagct |
201 |
Q |
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| T |
11487373 |
aaatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagct |
11487274 |
T |
|
| Q |
202 |
tcaaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaa |
301 |
Q |
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| T |
11487273 |
taaaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaa |
11487174 |
T |
|
| Q |
302 |
tttaagaagcccaagaagaaaaagtccttccgaaagaaagataagctggatattattgcccttgaagctgaagctgaagctgtctcttcaggattgggtg |
401 |
Q |
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| T |
11487173 |
tttaagaagcccaagaagaaaaagtccttccgaaagaaagataagctggatattattgcccttgaagctgaa------gctgtctcttcaggattgggtg |
11487080 |
T |
|
| Q |
402 |
ttggtgaccttggttgtcagaaagatgcaaagaggcaagccatcaaagacgaacaggaaagattgacgactgaaatgagaaataatgcttaccggtctgc |
501 |
Q |
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| T |
11487079 |
ttggtgaccttggttgtcggaaagatgcaaagaggcaagccatcaaagacgaacaggaaagattgacaactgaaatgagaaataatgcttaccggtctgc |
11486980 |
T |
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| Q |
502 |
ttatgctaaagcagatgaagcctctgaa |
529 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11486979 |
ttatgctaaagcagatgaagcctctgaa |
11486952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 206 - 525
Target Start/End: Complemental strand, 37375612 - 37375299
Alignment:
| Q |
206 |
agaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaattta |
305 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
37375612 |
agaaggttaactggtggttccactaataactttgaagaccttacttcatctggaaaggtatcctcagattactattctcacgaagaaatgcttcaattta |
37375513 |
T |
|
| Q |
306 |
agaagcccaagaagaaaaagtccttccgaaagaaagataagctggatattattgcccttgaagctgaagctgaagctgtctcttcaggattgggtgttgg |
405 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
37375512 |
agaagcccaagaagaaaaagtccttacggaagaaagataagctggacattaatgcccttgaagctgaa------gctgtctcttcaggattgggtattgg |
37375419 |
T |
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| Q |
406 |
tgaccttggttgtcagaaagatgcaaagaggcaagccatcaaagacgaacaggaaagattgacgactgaaatgagaaataatgcttaccggtctgcttat |
505 |
Q |
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||||||||||| || ||||||||| |||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
37375418 |
tgaccttggttctcggaaagatgcgaagaggcaagccatcaaagatgaacaagaaagattggcagctgaaatgagaaataatgcttaccaaactgcttat |
37375319 |
T |
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| Q |
506 |
gctaaagcagatgaagcctc |
525 |
Q |
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|||||||||||||||||||| |
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| T |
37375318 |
gctaaagcagatgaagcctc |
37375299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 37376271 - 37376204
Alignment:
| Q |
73 |
gttcaatgatgtcccttccacggaaaagaaaatacttccaaaatatgatgatctggctgctgaagagg |
140 |
Q |
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||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37376271 |
gttcaatgatgacccctcctcggaaaagaaaatacttccaaaatatgatgatccggctgctgaagagg |
37376204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 37376108 - 37376047
Alignment:
| Q |
138 |
agggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagag |
199 |
Q |
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| T |
37376108 |
agggtttaactttggatgaaagaggaagattctcaggcgaagctgaaaagagacttgaagag |
37376047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 37376434 - 37376384
Alignment:
| Q |
2 |
ggagaacaaaaacaacgggatgatgcttataaagctgcgaaaaagaaaact |
52 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
37376434 |
ggagaacaaaaacgtcgggatgatgcttataaagctgcaaaaaagaaaact |
37376384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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