View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_20 (Length: 239)
Name: NF2900_low_20
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_20 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 34186933 - 34186713
Alignment:
| Q |
19 |
gctacggccagcacttgtctcatcttgagttactttcagcacttgctcttcgtgtgaattatgtccattcattctttgctcgtgtaccaacaagctactc |
118 |
Q |
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| T |
34186933 |
gctacggccagcacttgtctcatcttgagttactttcagcacttgctcttcgtgtgaattatgtccattcattctttgctcgtgtaccaacaagctactc |
34186834 |
T |
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| Q |
119 |
tgtagttcatctacagccatggaatccaattcatgtgattcttcaatagaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcga |
218 |
Q |
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| T |
34186833 |
tgtagttcatctacagccatggaatccaaatcatgtgattcttcaatagaacatactacataatcgtacctagcggtcattgagcgaagaatcttttcga |
34186734 |
T |
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| Q |
219 |
taacagtaagatccgccattt |
239 |
Q |
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| T |
34186733 |
taacagtaagatccgccattt |
34186713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 518763 - 518593
Alignment:
| Q |
71 |
tgtgaattatgtccattcattctttgctcgtgtaccaacaagctactctgtagttcatctacagccatggaatccaattcatgtgattcttcaatagaac |
170 |
Q |
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| T |
518763 |
tgtgaattgtggtcattcattcgttgttcgtgtaccaacgagctacttcggagttcatctgcattcatggaatctagatcatgagattattcaatagaac |
518664 |
T |
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| Q |
171 |
atactacataatcgtacctagcggtcattgagc--gaagaatcttttcgataacagtaagatccgccattt |
239 |
Q |
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| T |
518663 |
atactacataatcgtacctggaggttattgagcgagaagaatcttttcgataacagtaagattcgacattt |
518593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 366899 - 367067
Alignment:
| Q |
71 |
tgtgaattatgtccattcattctttgctcgtgtaccaacaagctactctgtagttcatctacagccatggaatccaattcatgtgattcttcaatagaac |
170 |
Q |
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| T |
366899 |
tgtgaattgtggtcattcattcgttgttcgtgtaccaacgagctacttcggagttcatctgcattcatggaatctaaatcatgagattattcaatagaac |
366998 |
T |
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| Q |
171 |
atactacataatcgtacctagcggtcattgagcgaagaatcttttcgataacagtaagatccgccattt |
239 |
Q |
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| T |
366999 |
acactacataatcgtacatggaggttattgagcgaagaatcttttcgacaacggtaagattcgacattt |
367067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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