View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_21 (Length: 239)
Name: NF2900_low_21
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 896212 - 896137
Alignment:
| Q |
17 |
aaattgcaggaagcggaaaaatttaggaatagtcaatagacttttcgacggccaacgacgacgtcaagttccacgg |
92 |
Q |
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| T |
896212 |
aaattgcaggaagcggaaaaatttaggaatagtcaatagacttttcgacggccaacgacgacgtcaagttccacgg |
896137 |
T |
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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 896144 - 896056
Alignment:
| Q |
117 |
ttccacaggtaaattgacacaattgttttgagaagatccgttccccacatttatcattagagtagtgatatttgaatatttgtgacaac |
205 |
Q |
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| T |
896144 |
ttccacgggtaaattgacacaattgttttgagaagatccgttccccacatttatcattatagtagtgatatttgaacatttgagacaac |
896056 |
T |
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