View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2900_low_23 (Length: 227)

Name: NF2900_low_23
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2900_low_23
NF2900_low_23
[»] chr1 (2 HSPs)
chr1 (135-221)||(46000733-46000819)
chr1 (1-63)||(52685097-52685159)
[»] chr8 (2 HSPs)
chr8 (1-63)||(3044778-3044840)
chr8 (3-63)||(36090500-36090560)
[»] chr3 (1 HSPs)
chr3 (3-63)||(33717289-33717349)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 46000819 - 46000733
Alignment:
Q  135 atcatctttctgcacatccatttgaacttccttctgcatataataagtatttaacttctcataatttgtgatatatatacctcattc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46000819 atcatctttctgcacatccatttgaacttccttctgcatataataagtatttaacttctcataatttgtaatatatatacctcattc 46000733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 52685097 - 52685159
Alignment:
Q  1 cggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 63  Q
    ||||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  52685097 cggcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc 52685159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3044840 - 3044778
Alignment:
Q  1 cggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 63  Q
    ||||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  3044840 cggcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc 3044778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 36090500 - 36090560
Alignment:
Q  3 gcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 63  Q
    ||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  36090500 gcaatcttaatttttaaattacttgcacaaggactatatgaagaaaacatactagactctc 36090560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 33717349 - 33717289
Alignment:
Q  3 gcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc 63  Q
    ||||||||||||||||| |||| |||||||||| | |||||||| |||  |||||| ||||    
T  33717349 gcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc 33717289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University