View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_3 (Length: 512)
Name: NF2900_low_3
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 3 - 496
Target Start/End: Complemental strand, 2384885 - 2384392
Alignment:
| Q |
3 |
atcggtcgacaaatgagaagtgaaggattactatcagaaatagtaccaataagcattttctggttgcttccacagtacattcttcttggtatatcagata |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
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| T |
2384885 |
atcggtcgacaaatgagaagtgaaggattactatcagaaatagtaccaataagcattttctggttactaccacagtacattcttcttggtatatcggata |
2384786 |
T |
|
| Q |
103 |
ttttcacagtggttggtatgcaagaattcttttacggtgaagttccgaagaatatgagaacaatgggaatagcattgtatactagtgttttcggagttgg |
202 |
Q |
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| T |
2384785 |
ttttcacagtggttggtatgcaagaatttttctacggtgaagttccgaagaatatgagaacaatgggaattgcattgtatacaagtgtttttggagttgg |
2384686 |
T |
|
| Q |
203 |
aagctttgttagtgcattgatgattacacttgttgaagtttacacaagctcaaaaggaacaccaagttggttttctgatgatatggtcgaggcacgtttg |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2384685 |
aagctttgttagtgcattgatgattacacttgttgaagtatatacaagttcaaaaggaacaccaagttggttttctgatgatatggtcgaggcgcgtttg |
2384586 |
T |
|
| Q |
303 |
gataattactattggcttctagcttggttaagttcaattagcttattgttgtatacactattgtgtaaatattactataataagagtgaatcagatagtt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2384585 |
gataattactattggcttctagcttggttaagttcaattagcttattgttgtatacactattgtgtaaatattactataataagagtgaatcagatagtt |
2384486 |
T |
|
| Q |
403 |
aaaacttagttttannnnnnnctgatatagttttcaagtgtaattttatcacaaagtttgtggaacaagttaccattatatcatattaatatac |
496 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2384485 |
aaaactgagttttatttttttctgatatagttttcaagtgtaattttatcacaaagtttgtggaacaagttaccattatatcatattaatatac |
2384392 |
T |
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