View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2900_low_5 (Length: 501)

Name: NF2900_low_5
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2900_low_5
NF2900_low_5
[»] chr5 (3 HSPs)
chr5 (4-176)||(41968670-41968854)
chr5 (231-364)||(41968488-41968621)
chr5 (439-485)||(41968349-41968395)
[»] chr3 (4 HSPs)
chr3 (253-361)||(1235529-1235637)
chr3 (117-176)||(1235723-1235782)
chr3 (439-485)||(1235383-1235429)
chr3 (244-287)||(1235630-1235673)
[»] chr6 (1 HSPs)
chr6 (4-72)||(29521956-29522024)
[»] chr8 (1 HSPs)
chr8 (16-71)||(35739589-35739644)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 41968854 - 41968670
Alignment:
Q  4 ggaggagcagagatctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaag 103  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968854 ggaggaggagagatctaagaattgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaag 41968755  T
Q  104 ggttccattaattcttta---------taatg---ttacatgaatgattttatttcaggctcatataattggagctaccattgag 176  Q
    ||||||||||||||||||         |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968754 ggttccattaattctttatatcctttttaatgttattacatgaatgattttatttcaggctcatataattggagctaccattgag 41968670  T

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Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 41968621 - 41968488
Alignment:
Q  231 acttcaactacagcttcagattcaactccagaaactcctgcaactcccacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968621 acttcaactacagcttcagattcaactccagaaactcctgcaactccgacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctc 41968522  T
Q  331 cagtgactcctgacccaacggtaaggcttataac 364  Q
    ||||||||||||||||||||||||||||||||||    
T  41968521 cagtgactcctgacccaacggtaaggcttataac 41968488  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 439 - 485
Target Start/End: Complemental strand, 41968395 - 41968349
Alignment:
Q  439 agtttcaggatggcaccactgaaggaagtcttaaaccagaaggtatt 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41968395 agtttcaggatggcaccactgaaggaagtcttaaaccagaaggtatt 41968349  T

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Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 1235637 - 1235529
Alignment:
Q  253 caactccagaaactcctgcaactcccacaactccaccagctccagtgactccaacgcctcctgcaacttcaccagctccagtgactcctgacccaacggt 352  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1235637 caactccagaaactccagcaactccgacaactccaccagctccggtgactccaacgcctcctgcaactccaccagctccagtgactcctgacccaacggt 1235538  T
Q  353 aaggcttat 361  Q
    |||||||||    
T  1235537 aaggcttat 1235529  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 1235782 - 1235723
Alignment:
Q  117 ctttataatgttacatgaatgattttatttcaggctcatataattggagctaccattgag 176  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1235782 ctttttaatgttacatgaatgattttatttcaggctcatataataggagctaccattgag 1235723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 439 - 485
Target Start/End: Complemental strand, 1235429 - 1235383
Alignment:
Q  439 agtttcaggatggcaccactgaaggaagtcttaaaccagaaggtatt 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1235429 agtttcaggatggcaccactgaaggaagtcttaaaccagaaggtatt 1235383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 1235673 - 1235630
Alignment:
Q  244 cttcagattcaactccagaaactcctgcaactcccacaactcca 287  Q
    ||||||||||||||||||||||||| | |||||| |||||||||    
T  1235673 cttcagattcaactccagaaactccggtaactccaacaactcca 1235630  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 29521956 - 29522024
Alignment:
Q  4 ggaggagcagagatctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaatt 72  Q
    ||||||| ||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  29521956 ggaggaggagagatctaggaattgaaggagtaatgaactgtaaataaagaagaggtgatgaccaaaatt 29522024  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 35739644 - 35739589
Alignment:
Q  16 atctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaat 71  Q
    ||||||||| ||||  |||||||||| ||||| |||||||||||||||||||||||    
T  35739644 atctaagaattgaaggagtaatgaaccgtaaagaaagaagaggtgatgaccaaaat 35739589  T

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