View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_6 (Length: 486)
Name: NF2900_low_6
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_6 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 28282461 - 28281994
Alignment:
| Q |
19 |
cagacaaacttaagcctcgtcgtgaatgcctattttatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282461 |
cagacaaacttaagcctcgtcgtgaatgcctattttatatatacattaagcagaaagttcaaacatactttacaacactgttatattaacacaataaaaa |
28282362 |
T |
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| Q |
119 |
taatgcaaaaactaacttacttgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282361 |
taatgcaaaaactaacttacttgcagccgaagaaacctcctttcacagtagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaat |
28282262 |
T |
|
| Q |
219 |
taagctgaatataagacacccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28282261 |
taagctgaatataagacacccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaaatttatagaatcaactaatgg |
28282162 |
T |
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| Q |
319 |
cagtactgaattttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgtt |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282161 |
cagtaccgaattttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgtt |
28282062 |
T |
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| Q |
419 |
cccagcctatgtttgcatgtgcatttgcattattttcatttatcctacctgaattgaaagctagttac |
486 |
Q |
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| T |
28282061 |
cccagcctatgtttgcatgtgcatttgcattattttcatttatcctacctgaattgaaagctagttac |
28281994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 132 - 486
Target Start/End: Complemental strand, 28290624 - 28290269
Alignment:
| Q |
132 |
aacttacttgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatata |
231 |
Q |
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||||||||||||||| |||||||||| ||||||| | | || |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
28290624 |
aacttacttgcagccaaagaaacctcttttcacagtcaacacggagggatgttcagcttttagaatgtgatgcttggtttgatcaattaagctgcatata |
28290525 |
T |
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| Q |
232 |
agaca--cccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatggcagtactgaat |
329 |
Q |
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||||| || ||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |
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| T |
28290524 |
agacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttata-aatcaactaatggcagtaccgaat |
28290426 |
T |
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| Q |
330 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatg |
429 |
Q |
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||||||||||||| |||||||||||| ||||||||| | |||||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| |
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| T |
28290425 |
tttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctcagagatcgtcttgataacaacatctgtgaattgttcccagcctata |
28290326 |
T |
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| Q |
430 |
tttgcatgtgcatttgcattattttcatttatcctacctgaattgaaagctagttac |
486 |
Q |
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|||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| |
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| T |
28290325 |
tttgcatgtgaatttaaattatcttcattcttcctacctgaattgaaagctagttac |
28290269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 29558277 - 29558432
Alignment:
| Q |
66 |
aagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcagccgaagaaacctcctttcaca |
165 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| |
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| T |
29558277 |
aagcagaaagttcaaacatactttacaacactgttatattaacacaataaatataatgcaaaaacaaccttacttgcagccgaagaaacctcttttcaca |
29558376 |
T |
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| Q |
166 |
ttagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaa |
221 |
Q |
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| | |||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
29558377 |
gtcaacacggaaggatgctcagctttcagaatgtgatgcttggtttgatcaattaa |
29558432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 330 - 468
Target Start/End: Original strand, 29558598 - 29558736
Alignment:
| Q |
330 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatg |
429 |
Q |
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||||||||||||| ||||| ||||| ||||||||| | | || |||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
29558598 |
tttctcctgagcagactctgcccactgcagaaacatgacactatctttcttctctgagattgtcttgataacagaatccgtaaattgttcccagcctata |
29558697 |
T |
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| Q |
430 |
tttgcatgtgcatttgcattattttcatttatcctacct |
468 |
Q |
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||||||||| |||||||||||| |||||| |||||||| |
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| T |
29558698 |
tttgcatgtccatttgcattatcttcattcttcctacct |
29558736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 28303174 - 28303078
Alignment:
| Q |
330 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcct |
426 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||| |||||||||||||||||| |
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| T |
28303174 |
tttctcctgagcagactttccccacagcagaaacacaactccttccttcttctgtgagattgtcttgataacagtatcagtaaattgttcccagcct |
28303078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 28278672 - 28278569
Alignment:
| Q |
54 |
tatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcagccgaagaaa |
153 |
Q |
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|||| ||||| |||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||| |||||||||||||| |||||| |
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| T |
28278672 |
tatacatacactaagaagaaagttcaaacatactttataacactgctatattaacacaataaatagaatgcaaaaaccaacttacttgcagctaaagaaa |
28278573 |
T |
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| Q |
154 |
cctc |
157 |
Q |
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|||| |
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| T |
28278572 |
cctc |
28278569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 19251309 - 19251144
Alignment:
| Q |
69 |
cagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcagccgaagaaacctcctttcaca-tt |
167 |
Q |
| |
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|||||| |||||||||| |||||||||||| |||||||||||| |||| || ||||||||| | ||||||||||||| ||||||||| ||||||| | |
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| T |
19251309 |
cagaaagttcaaacatattttacaacactgctatattaacacagtaaatattatgcaaaaatcatcttacttgcagccaaagaaaccttttttcacagtc |
19251210 |
T |
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| Q |
168 |
agctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatataaga |
234 |
Q |
| |
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| || |||| |||||| ||||||| ||||| |||||||||||| |||||||| |||| | |||||| |
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| T |
19251209 |
aact-cagagggatgtgcagcttttagaatgtgatgcttggttgcatcaattatgctgcacataaga |
19251144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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