View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2900_low_7 (Length: 464)
Name: NF2900_low_7
Description: NF2900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2900_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 28798910 - 28798610
Alignment:
| Q |
14 |
aacactcaaagtgaagtcatgtgtcatagataaaaataaggctttgtatcaatgtcaaggtcaaccttgagggagtcaatgttttgtggttggactgcga |
113 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
28798910 |
aacactcaaagtgaagtcatgtgtcctagataaaaataaggctttgtatcaatgtcaaggtcaaccttaagggagtcaatgttttgtggttggactgtga |
28798811 |
T |
|
| Q |
114 |
tcctctatactaagtggtgactcaagaaaacgtcgctgatgcatgcaaaactccttgctaagaaaagaaacattgatctaatttatgcaattgattaaaa |
213 |
Q |
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|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
28798810 |
tcctctatactaagcggtgactcaagaacacgtcactgatgcatgcaaaactccttgctaagaaaagaaacattgatctgatttatggaattgattaaaa |
28798711 |
T |
|
| Q |
214 |
ttaatttagagcatcattaatggaagtgaattgttgattcgctgactacaattaaataatatctcaacattcaatccggcattcaaagacaatggattat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
28798710 |
ttaatttagagcatcattaatggaagtgaattgttgattcgctgactacaattaaataatatctcaacattcaatcgggcattcaaaaacaatggattat |
28798611 |
T |
|
| Q |
314 |
t |
314 |
Q |
| |
|
| |
|
|
| T |
28798610 |
t |
28798610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 316 - 448
Target Start/End: Complemental strand, 28798022 - 28797890
Alignment:
| Q |
316 |
acaacggtgattaaacttcatctctatataatggatcaagttttgtccaaataagggtgctaacttatacaacacttaaacatattcacgtatatacaat |
415 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28798022 |
acaacggtgattatacttcatctctatataatggatcaagttttgtctaaataagggtgctaacctatacaacacttaaacatattcacgtatatacaat |
28797923 |
T |
|
| Q |
416 |
cattcaaagtctatcatgttcatatattattgt |
448 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28797922 |
cattcaaagtctatcatgttcatatattattgt |
28797890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 19584084 - 19583978
Alignment:
| Q |
202 |
aattgattaaaattaatttagagcatcattaatggaagtgaattgttgattcgctgactacaatta---aataatatctcaacattcaatccggcattca |
298 |
Q |
| |
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|||||| |||| || ||| ||||||||||| || ||| ||||| | ||||||| |||||||||||| || |||||| || ||||||||| | |||||| |
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| T |
19584084 |
aattgagtaaatttcattaagagcatcatttatagaaatgaatggctgattcgttgactacaattaattaaaaatatcacagcattcaatcagacattca |
19583985 |
T |
|
| Q |
299 |
aagacaa |
305 |
Q |
| |
|
||||||| |
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|
| T |
19583984 |
aagacaa |
19583978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 301
Target Start/End: Original strand, 13067190 - 13067345
Alignment:
| Q |
150 |
tgatgcatgcaa-aactccttgctaagaaaagaaacattgatctaatttatgcaattgattaaaattaatttagagcatcattaatggaagtgaattgtt |
248 |
Q |
| |
|
||||| |||||| ||||| ||||||||||| ||||| ||| | | | |||||||||||| ||||||| || ||| ||||||| || ||| ||||| || |
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|
| T |
13067190 |
tgatgtatgcaacaactcattgctaagaaaggaaactttgttatgacttatgcaattgagtaaaattcatcaagaccatcattgatagaaatgaatgatt |
13067289 |
T |
|
| Q |
249 |
gattcgctgactacaatta---aataatatctcaacattcaatccggcattcaaag |
301 |
Q |
| |
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||||| ||| |||||||| || |||||||||| ||||||| || |||||||| |
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|
| T |
13067290 |
gattctttgagtacaattaatcaagaatatctcaatattcaattaggaattcaaag |
13067345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 20024523 - 20024419
Alignment:
| Q |
150 |
tgatgcatgcaaa-actccttgctaagaaaagaaacattgatctaatttatgcaattgattaaaattaatttagagcatcattaatggaagtgaattgtt |
248 |
Q |
| |
|
|||||||||||| |||| | ||||||||| |||||| || ||| | | |||||||||| |||| | ||| ||||||||||| |||||| |||| |||| |
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|
| T |
20024523 |
tgatgcatgcaatgactcttcgctaagaaaggaaacaatgttctgactaatgcaattgagaaaaaattattaagagcatcattgatggaaatgaaatgtt |
20024424 |
T |
|
| Q |
249 |
gattc |
253 |
Q |
| |
|
||||| |
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|
| T |
20024423 |
gattc |
20024419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 22094758 - 22094705
Alignment:
| Q |
199 |
tgcaattgattaaaattaatttagagcatcattaatggaagtgaattgttgatt |
252 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||||| || ||||| ||||||| |
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|
| T |
22094758 |
tgcaattgagtaaaattcattaagagcatcattaatgaaaatgaatggttgatt |
22094705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 6074815 - 6074920
Alignment:
| Q |
163 |
actccttgctaagaaaagaaacattgatctaatttatgcaattgattaaaattaatttagagcatcattaatggaagtgaattgttgattcgctgactac |
262 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| | || || || || ||||||| ||| ||||||||||| ||| || ||||| |||||| ||||||| | |
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| T |
6074815 |
actctttgctaagaaaggaaacattgttctgacttgtgaaaaggactaaaatttattaagagcatcattgatgaaaatgaatggttgatatgctgactgc |
6074914 |
T |
|
| Q |
263 |
aattaa |
268 |
Q |
| |
|
|||||| |
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|
| T |
6074915 |
aattaa |
6074920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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