View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2901_high_1 (Length: 496)
Name: NF2901_high_1
Description: NF2901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2901_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 10 - 495
Target Start/End: Original strand, 29331617 - 29332103
Alignment:
| Q |
10 |
catcatcactaacttgaaatgcacgaaatgggtaaaaatagtaatgaaaatcattgtctgacattgtatacactcagaaccttgtagtttttgcataatg |
109 |
Q |
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| T |
29331617 |
catcatcactaacttgaaatgcacggaatgggtaaaaatagtaatgaaaatcattgtctgacattgtatacactcagaaccttgtagtttttgcataatg |
29331716 |
T |
|
| Q |
110 |
gtcaacttcacagttcacacacaggaacatatggtgcaggcattgattaataaataacgttctaatggcacaattataagtaaccaacaaagacttacac |
209 |
Q |
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| T |
29331717 |
gtcaacttcacagttcacacacaggaacatatggtgcaggcattgattaataaataatgttctaatggcacaattataagtaaccaacaaagacttacac |
29331816 |
T |
|
| Q |
210 |
actgagtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggccgtgtcattaa |
309 |
Q |
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| T |
29331817 |
actgagtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggcagtgtcattaa |
29331916 |
T |
|
| Q |
310 |
aatttaggcctgtgtaagagaaaccaaaagacaaaaacaaacatacaactacacatcatgacatacgtatatcaagatc-aaggctttnnnnnnnnttgt |
408 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
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| T |
29331917 |
aatttaggcctgtgtaagagaaaccaaaagacaaatacaaacatacaactacacatcatgacatacgtatatcaagatcaaaggctttaaaaaaaatggt |
29332016 |
T |
|
| Q |
409 |
ccgcctgcaactgtaattgtggccatagtgcaaatagtttccttgttcctgcagccacttctcaacctcaattacgactgcttaaac |
495 |
Q |
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| T |
29332017 |
ccgcctgcaactgtaattgtggccacagtgcaaatattttccttgttcctgcagccacttctcaacctcaattatgactgcttaaac |
29332103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 344
Target Start/End: Original strand, 29303480 - 29303609
Alignment:
| Q |
215 |
gtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggccgtgtcattaaaattt |
314 |
Q |
| |
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||||||||| ||||| ||| |||||||||||| || |||||||| || |||||| | || | ||||| |||| |||||||| ||||||||||||||| |
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| T |
29303480 |
gtataatccgttagattttaatttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaattt |
29303579 |
T |
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| Q |
315 |
aggcctgtgtaagagaaaccaaaagacaaa |
344 |
Q |
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|||| |||||||||||||| |||| ||||| |
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| T |
29303580 |
aggcttgtgtaagagaaactaaaatacaaa |
29303609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 29320825 - 29320876
Alignment:
| Q |
217 |
ataatccattagacttttatttgttaaatactattgattgatcagagaaagt |
268 |
Q |
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||||||||||||| ||| |||||||||||| ||||||||||| || |||||| |
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| T |
29320825 |
ataatccattagattttaatttgttaaatattattgattgataagtgaaagt |
29320876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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