View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2901_low_2 (Length: 480)
Name: NF2901_low_2
Description: NF2901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2901_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 12467509 - 12467054
Alignment:
| Q |
1 |
gaagacttctgcaactagaggatgtaacnnnnnnnggtaatagctttttgaattatctctttctacatcaaatgtgatgaaaattattatacactaatta |
100 |
Q |
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| T |
12467509 |
gaagacttctgcaactagaggatgtaacaaaagaaggtaatagctttttgaattatctctttctacatcaaatgtgatgaaaattattatacactaatta |
12467410 |
T |
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| Q |
101 |
tatttgttaatgatgcacaaaataatataactgtgaagtgtacaagttagcatgacccataaatttaatgcatatgcccaaattatttaaggtccttata |
200 |
Q |
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| T |
12467409 |
tatttgttaatgatgcacgaaataatataaccgtgaagtgtacaagttagcatgacccataaatttaatgcatatgcccaaattatttaaggtccttata |
12467310 |
T |
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| Q |
201 |
catatatttaaagctgtgcatttgtataattgaatgtgatttgcttaatgtagtcttccataatcagtttttgaatgaatcattg-aaataatggattac |
299 |
Q |
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| T |
12467309 |
catatattttaagctgtgcatttgtataattgaatgtgatttgcttaatgtagtcttccataattagttttttaatggatcattgaaaataatggattac |
12467210 |
T |
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| Q |
300 |
atgtactcatatccatgcagaaacattacacaaacatgggagaaggtgacagaaactccaacagatgatgatgggcatcaatggagaaaatatggcnnnn |
399 |
Q |
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| T |
12467209 |
atgtactcatatccatgcagaaacattacacaaacatgggagaaggtgacacaaactccaacagatgatgatgggcatcaatggagaaaatatggcaaaa |
12467110 |
T |
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| Q |
400 |
nnnngatcaacaattctccatacttcaggtgagaattaatcatggtcgaacaatat |
455 |
Q |
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| T |
12467109 |
aaaagatcaacaattctccatacttaaggtgagaattaatcatggtcgaacaatat |
12467054 |
T |
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Target: scaffold0002 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 478700 - 478770
Alignment:
| Q |
313 |
catgcagaaacattacacaaacatgggagaaggtgacagaaactccaacagatgatgatgggcatcaatggaga |
386 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
478700 |
catgcagaagaactacacaaacatgggagaaggtgacagaaactccaaca---gatgatgggcatcaatggaga |
478770 |
T |
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