View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2901_low_3 (Length: 387)

Name: NF2901_low_3
Description: NF2901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2901_low_3
NF2901_low_3
[»] chr4 (2 HSPs)
chr4 (8-182)||(8516322-8516496)
chr4 (246-373)||(8516131-8516258)
[»] chr2 (13 HSPs)
chr2 (8-182)||(20948845-20949019)
chr2 (8-182)||(15808520-15808694)
chr2 (8-182)||(43018744-43018918)
chr2 (246-373)||(20949089-20949216)
chr2 (8-182)||(27657275-27657449)
chr2 (8-182)||(21541477-21541651)
chr2 (8-182)||(38800728-38800902)
chr2 (266-368)||(27657089-27657191)
chr2 (266-368)||(21541735-21541837)
chr2 (262-373)||(38800537-38800648)
chr2 (97-142)||(30768810-30768855)
chr2 (97-142)||(30772973-30773018)
chr2 (344-373)||(15809431-15809460)
[»] scaffold0630 (2 HSPs)
scaffold0630 (24-182)||(2552-2710)
scaffold0630 (262-330)||(2404-2472)
[»] chr8 (8 HSPs)
chr8 (8-182)||(24703622-24703796)
chr8 (21-182)||(7562236-7562397)
chr8 (266-368)||(7562481-7562583)
chr8 (266-368)||(24703880-24703982)
chr8 (247-344)||(24745051-24745148)
chr8 (247-344)||(43582874-43582971)
chr8 (30-179)||(24744855-24745004)
chr8 (90-179)||(43583018-43583107)
[»] chr5 (6 HSPs)
chr5 (8-182)||(32412378-32412552)
chr5 (8-182)||(21790911-21791085)
chr5 (246-373)||(21791149-21791276)
chr5 (266-368)||(32412636-32412738)
chr5 (30-179)||(21006601-21006750)
chr5 (247-344)||(21006797-21006894)
[»] chr6 (4 HSPs)
chr6 (8-182)||(11388249-11388423)
chr6 (246-373)||(11388058-11388185)
chr6 (247-344)||(26451595-26451692)
chr6 (30-179)||(26451739-26451888)
[»] chr1 (3 HSPs)
chr1 (258-373)||(40133391-40133507)
chr1 (84-167)||(5944147-5944230)
chr1 (260-373)||(5944492-5944594)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 8516496 - 8516322
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  8516496 tgagaagaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactatgactgatgcatttaatcgtaattttgggaaaaaattctgggg 8516397  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8516396 ttgtagaaactacaggaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 8516322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 246 - 373
Target Start/End: Complemental strand, 8516258 - 8516131
Alignment:
Q  246 caagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatc 345  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  8516258 caagttcaagtttgagttatcaagaacaaggctatggttgatcatggcgttattttttggatttttatgctttaggattgtgttgatcttaggaacaatc 8516159  T
Q  346 ttagtttgcaaaaccacatccattttga 373  Q
    ||||||||||||||||||||||||||||    
T  8516158 ttagtttgcaaaaccacatccattttga 8516131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 20948845 - 20949019
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20948845 tgagaagaatggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 20948944  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20948945 ttgtagacactacaggaattcgagtgacaaaggatgcagctactttaagatagttgatgaagatgatgttatgga 20949019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 15808520 - 15808694
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||| |    
T  15808520 tgagaagaagggtagtaccaaatcgtaggtgtggagaaacagttgtaattcaaactgtaactgatgcattgaatcgtaattttgggaagaaattatggtg 15808619  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808620 ttgtagaaactacaggaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 15808694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 43018918 - 43018744
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||| |||||    
T  43018918 tgagaagaagggcagtaccaaattgtaggtgtggagaaacagttgtaattcgaactataactgatgcattgaatcgtaattttgggaagaaattctgggg 43018819  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43018818 ttgtagaaactacataaattcgagtgacaaaggatgtagctactttaagttagttgatgaagatgatgttatgga 43018744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 20949089 - 20949216
Alignment:
Q  246 caagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatc 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20949089 caagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatgctttgggattgtgttgatcttaggaacaatc 20949188  T
Q  346 ttagtttgcaaaaccacatccattttga 373  Q
    ||||||||||||||||||||||||||||    
T  20949189 ttagtttgcaaaaccacatccattttga 20949216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 27657449 - 27657275
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||  ||||||||||||| ||||||||||||  ||||| ||||||||||| ||||||||||| ||||  |||| |||||| ||||| |||||    
T  27657449 tgagaagaaggtcagtaccaaattgtaggtgtggagaaaatgttgtcattcgaactgtaactgatgcattgaatccaaattgtgggaagaaattttgggg 27657350  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    |||||||||||| |  ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  27657349 ttgtagaaactatagaaattcgagtgacaaaggatgcagttactttaggttagttgacgaagatgatgttatgga 27657275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 21541477 - 21541651
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||  ||||||||||||| ||||||||||||  |||||  |  ||||||| ||||||||||| ||||  |||| |||||| ||||| ||||     
T  21541477 tgagaagaaggtcagtaccaaattgtaggtgtggagaaaatgttgtggtgagaactgtaactgatgcattgaatccaaattgtgggaagaaattttggga 21541576  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    |||||||||||| || ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  21541577 ttgtagaaactataaaaattcaagtgacaaaggatgcagttactttaggttagttgatgaagatgatgttatgga 21541651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 38800902 - 38800728
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||| ||||| ||||||  ||||||||||||  |||||  |||||||||| || |||||||| ||||  |||| |||||| ||||| |||||    
T  38800902 tgagaagaagggcagtacgaaattgcaggtgtggagaaaatgttgttgttcgaactgtaacggatgcattgaatccaaattgtgggaagaaattttgggg 38800803  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
     ||||||||||| |  ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  38800802 ctgtagaaactatagaaattcgattgaaaaaggatgcagttactttaagttagttgatgaagatgatgttatgga 38800728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 27657191 - 27657089
Alignment:
Q  266 caagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatcttagtttgcaaaaccacatc 365  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  27657191 caagaacaaggaaatggttgataatggctttaatttttggatttgtatgctttgggattgtgttggtcttaggaacaatgttagtttgcaaaaccacatc 27657092  T
Q  366 cat 368  Q
    |||    
T  27657091 cat 27657089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 21541735 - 21541837
Alignment:
Q  266 caagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatcttagtttgcaaaaccacatc 365  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  21541735 caagaacaaggaaatggttgataatggctttaatttttggatttgtatgctttgggattgtgttggtcttaggaacagtgttagtttgcaaaaccacatc 21541834  T
Q  366 cat 368  Q
    |||    
T  21541835 cat 21541837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 373
Target Start/End: Complemental strand, 38800648 - 38800537
Alignment:
Q  262 ttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatcttagtttgcaaaacca 361  Q
    ||||||||||||||| | |||||||| ||||||||  ||||||||||| |||| ||||| ||||||||| ||||||||||| | |||| |||||||| ||    
T  38800648 ttatcaagaacaagggagtggttgataatggcgttgatttttggatttgtatgctttggaattgtgttggtcttaggaacattgttagcttgcaaaagca 38800549  T
Q  362 catccattttga 373  Q
    ||||||||||||    
T  38800548 catccattttga 38800537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 30768855 - 30768810
Alignment:
Q  97 aaattatggggttgtagaaactacaagaattcgagtgacaaaggat 142  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  30768855 aaattatggggttgtagaaactatagaaattcgagtgacaaaggat 30768810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 30773018 - 30772973
Alignment:
Q  97 aaattatggggttgtagaaactacaagaattcgagtgacaaaggat 142  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  30773018 aaattatggggttgtagaaactatagaaattcgagtgacaaaggat 30772973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 15809431 - 15809460
Alignment:
Q  344 tcttagtttgcaaaaccacatccattttga 373  Q
    ||||||||||||||||||||||||||||||    
T  15809431 tcttagtttgcaaaaccacatccattttga 15809460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 2710 - 2552
Alignment:
Q  24 accaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatggggttgtagaaactacaag 123  Q
    |||||||||| | ||||||||||||||||||||| ||||||| ||||||||| | |||| ||||| |||||| ||||||||||||||||||||||| | |    
T  2710 accaaattgtagctgtggagaaacagttgtaatttgaactgtaactgatgcaatgaatcctaattatgggaagaaattatggggttgtagaaactatagg 2611  T
Q  124 aattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2610 aattcgagtcacaaaggatgcagttactttaagttagttgatgaagatgatgttatgga 2552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 2472 - 2404
Alignment:
Q  262 ttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttg 330  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||| ||| |||| |||||||||||||||    
T  2472 ttatcaagaacaaggaaatggttgataatggctttaatttttggttttgtatgctttgggattgtgttg 2404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 24703622 - 24703796
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||  ||||||||||||| ||||||||||||  ||| |  |  ||||||| ||||||||||| ||||  |||| |||||| ||||| |||||    
T  24703622 tgagaagaaggtcagtaccaaattgtaggtgtggagaaaatgttatggtgagaactgtaactgatgcattgaatccaaattgtgggaagaaattttgggg 24703721  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    |||||||||||| || ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  24703722 ttgtagaaactataaaaattcaagtgacaaaggatgcagttactttaggttagttgatgaagatgatgttatgga 24703796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 7562236 - 7562397
Alignment:
Q  21 agtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatggggttgtagaaactac 120  Q
    ||||||||||||| ||||||||||||  |||||  |  ||||||| ||||||||||| ||||  |||| |||||| ||||| |||||||||||||||||     
T  7562236 agtaccaaattgtaggtgtggagaaaatgttgtggtgagaactgtaactgatgcattgaatccaaattgtgggaagaaattttggggttgtagaaactat 7562335  T
Q  121 aagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    || ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  7562336 aaaaattcaagtgacaaaggatgcagttactttaggttagttgatgaagatgatgttgtgga 7562397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 7562481 - 7562583
Alignment:
Q  266 caagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatcttagtttgcaaaaccacatc 365  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  7562481 caagaacaaggaaatggttgataatggctttaatttttggatttgtatgctttgggattgtgttggtcttaggaacagtgttagtttgcaaaaccacatc 7562580  T
Q  366 cat 368  Q
    |||    
T  7562581 cat 7562583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 24703880 - 24703982
Alignment:
Q  266 caagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatcttagtttgcaaaaccacatc 365  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  24703880 caagaacaaggaaatggttgataatggctttaatttttggatttgtatgctttgggattgtgttggtcttaggaacagtgttagtttgcaaaaccacatc 24703979  T
Q  366 cat 368  Q
    |||    
T  24703980 cat 24703982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 24745051 - 24745148
Alignment:
Q  247 aagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaat 344  Q
    ||||| |||| ||||||||||||||||||  |||||||| | |||||  |  ||||||||||| ||||||||||||||| |||| | |||||||||||    
T  24745051 aagttgaagtttgagttatcaagaacaagaaaatggttgttaatggcactgatttttggatttgtatggtttgggattgggttggtgttaggaacaat 24745148  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 43582971 - 43582874
Alignment:
Q  247 aagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaat 344  Q
    ||||| |||| ||||||||||||||||||  |||||||| | |||||  |  ||||||||||| ||||||||| ||||| |||| | |||||||||||    
T  43582971 aagttgaagtttgagttatcaagaacaagaaaatggttgttaatggcactgatttttggatttgtatggtttgtgattgggttggtgttaggaacaat 43582874  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 24744855 - 24745004
Alignment:
Q  30 ttgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatggggttgtagaaactacaagaattcg 129  Q
    |||| ||||||||||| ||  |||| ||||||| || |||||  | || |||| ||| | |||||| ||||| |||||||| |  ||||||| |||| |     
T  24744855 ttgtaggtgtggagaaccaactgtagttcgaacggttactgactctttgaatcctaactatgggaagaaattttggggttgcatcaactacatgaatgct 24744954  T
Q  130 agtgacaaaggatgcagctactttaagttagttgatgaagatgatgttat 179  Q
      ||| ||||| ||||||||||||||||| |||| |||||||||| ||||    
T  24744955 tatgataaaggttgcagctactttaagtttgttggtgaagatgattttat 24745004  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 43583107 - 43583018
Alignment:
Q  90 tgggaaaaaattatggggttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttat 179  Q
    |||||| ||||| |||||||| || ||||||| |||| |   ||||||||| ||||||||||||||||| |||| ||| |||||| ||||    
T  43583107 tgggaagaaattttggggttgcagcaactacaggaatgcttatgacaaaggttgcagctactttaagttggttggtgacgatgattttat 43583018  T

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Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 32412378 - 32412552
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||  ||||||||||||| ||||||||||||  |||||  |  ||||||| ||||||||||| ||||  |||| |||||| ||||| |||||    
T  32412378 tgagaagaaggtcagtaccaaattgtaggtgtggagaaaatgttgtggtgagaactgtaactgatgcattgaatccaaattgtgggaagaaattttgggg 32412477  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
    |||||||||||| || ||||| |||||||||||||| || ||||||| |||||||||||||||||||||| ||||    
T  32412478 ttgtagaaactataaaaattcaagtgacaaaggatgtagttactttaggttagttgatgaagatgatgttgtgga 32412552  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 21790911 - 21791085
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||| || || ||||||  ||||||| ||||  |||||  |||||||||| |||||| |||| ||||  |||| |||||| ||||| |||||    
T  21790911 tgagaagaagggcagcacgaaattgcaggtgtggtgaaaatgttgttgttcgaactgtaactgattcattgaatccaaattgtgggaagaaattttgggg 21791010  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
     ||||||||||| |  ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21791011 ctgtagaaactatagaaattcgattgacaaaggatgcagttactttaagttagttgatgaagatgatgttatgga 21791085  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 21791149 - 21791276
Alignment:
Q  246 caagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatc 345  Q
    ||||||||||  ||| ||||||||||||||| | |||||||| ||||||||  ||||||||||| |||| ||||||||||||||| ||||||||||| |     
T  21791149 caagttcaagagtgacttatcaagaacaagggagtggttgataatggcgttgatttttggatttgtatgctttgggattgtgttggtcttaggaacattg 21791248  T
Q  346 ttagtttgcaaaaccacatccattttga 373  Q
    |||| |||||||| ||||||||||||||    
T  21791249 ttagcttgcaaaagcacatccattttga 21791276  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 32412636 - 32412738
Alignment:
Q  266 caagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatcttagtttgcaaaaccacatc 365  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  32412636 caagaacaaggaaatggttgataatggctttaatttttggatttgtatgctttgggattgtgttggtcttaggaacagtgttagtttgcaaaaccacatc 32412735  T
Q  366 cat 368  Q
    |||    
T  32412736 cat 32412738  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 21006601 - 21006750
Alignment:
Q  30 ttgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatggggttgtagaaactacaagaattcg 129  Q
    |||| ||||||||||| ||  |||| ||||||| ||||||||  | || |||| ||| | |||||| ||||| |||||||| || |||||||||||| |     
T  21006601 ttgtaggtgtggagaaccaactgtagttcgaacggtgactgactctttgaatcataactatgggaagaaattttggggttgcagcaactacaagaatgct 21006700  T
Q  130 agtgacaaaggatgcagctactttaagttagttgatgaagatgatgttat 179  Q
      ||||||||| |||| |||||||||||| |||| ||| |||||| ||||    
T  21006701 tatgacaaaggttgcaactactttaagttggttggtgacgatgattttat 21006750  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 21006797 - 21006894
Alignment:
Q  247 aagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaat 344  Q
    ||||| |||| ||||||||||||||||||  |||||||| | |||||  |  ||||||||||| ||||||||||||||| |||| | |||||||||||    
T  21006797 aagttgaagtttgagttatcaagaacaagaaaatggttgttaatggcactgatttttggatttgtatggtttgggattgggttggtgttaggaacaat 21006894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 11388423 - 11388249
Alignment:
Q  8 tgagatgaagggtagtaccaaattgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatgggg 107  Q
    ||||| |||||| || || ||||||  ||||||| ||||  |||||  |||||||||| |||||| |||| ||||  |||| |||||| ||||| |||||    
T  11388423 tgagaagaagggcagcacgaaattgcaggtgtggtgaaaatgttgttgttcgaactgtaactgattcattgaatccaaattgtgggaagaaattttgggg 11388324  T
Q  108 ttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatgaagatgatgttatgga 182  Q
     ||||||||||| |  ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11388323 ctgtagaaactatagaaattcgattgacaaaggatgcagttactttaagttagttgatgaagatgatgttatgga 11388249  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 246 - 373
Target Start/End: Complemental strand, 11388185 - 11388058
Alignment:
Q  246 caagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatc 345  Q
    ||||||||||  ||| ||||||||||||||| | |||||||| ||||||||  ||||||||||| |||| ||||||||||||||| ||||||| ||| |     
T  11388185 caagttcaagagtgacttatcaagaacaagggagtggttgataatggcgttgatttttggatttgtatgctttgggattgtgttggtcttagggacattg 11388086  T
Q  346 ttagtttgcaaaaccacatccattttga 373  Q
    |||| |||||||| ||||||||||||||    
T  11388085 ttagcttgcaaaagcacatccattttga 11388058  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 26451692 - 26451595
Alignment:
Q  247 aagttcaagtctgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaat 344  Q
    ||||| |||| ||||||||||||||||||  |||||||| | |||||  |  |||| |||||| ||||||||||||||| |||| | |||||||||||    
T  26451692 aagttgaagtttgagttatcaagaacaagaaaatggttgttaatggcactgattttcggatttgtatggtttgggattgggttggtgttaggaacaat 26451595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 26451888 - 26451739
Alignment:
Q  30 ttgtgggtgtggagaaacagttgtaattcgaactgtgactgatgcatttaatcgtaattttgggaaaaaattatggggttgtagaaactacaagaattcg 129  Q
    |||| ||||||||||| ||  |||| ||||||| || |||||  | || |||| ||| | |||||| ||||| |||||||| |  ||||||| |||| |     
T  26451888 ttgtaggtgtggagaaccaactgtagttcgaacggttactgactctttgaatcctaactatgggaagaaattttggggttgcaacaactacaggaatgct 26451789  T
Q  130 agtgacaaaggatgcagctactttaagttagttgatgaagatgatgttat 179  Q
      ||| ||||| ||||||||||||||||| |||| |||||||||| ||||    
T  26451788 tatgataaaggttgcagctactttaagttggttggtgaagatgattttat 26451739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 373
Target Start/End: Original strand, 40133391 - 40133507
Alignment:
Q  258 tgagttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgg-gattgtgttgatcttaggaacaatcttagtttgcaa 356  Q
    |||||||||||||| ||||||||||||||| ||| |||||  |||||||||| |||| ||| | |||||||||| | ||| ||||||| |||||||||||    
T  40133391 tgagttatcaagaataaggcaatggttgataatgacgttaagttttggatttgtatgcttttgagattgtgttggtgttaagaacaatgttagtttgcaa 40133490  T
Q  357 aaccacatccattttga 373  Q
    |||||||||||||||||    
T  40133491 aaccacatccattttga 40133507  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 5944147 - 5944230
Alignment:
Q  84 taattttgggaaaaaattatggggttgtagaaactacaagaattcgagtgacaaaggatgcagctactttaagttagttgatga 167  Q
    ||||| |||||| |||||||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||||||||||||    
T  5944147 taattgtgggaagaaattatggggttgtagaaactacagaaattcgagtgtcaaaggatgtagctactttaagttagttgatga 5944230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 373
Target Start/End: Original strand, 5944492 - 5944594
Alignment:
Q  260 agttatcaagaacaaggcaatggttgatcatggcgttattttttggatttttatggtttgggattgtgttgatcttaggaacaatcttagtttgcaaaac 359  Q
    |||||||||||||||| ||||||||||| |||||| || ||||||||||| |||  |||||           |||| |||||||| ||||||||||||||    
T  5944492 agttatcaagaacaagacaatggttgataatggcgctaatttttggatttgtatattttgg-----------tctttggaacaatgttagtttgcaaaac 5944580  T
Q  360 cacatccattttga 373  Q
    ||||||||||||||    
T  5944581 cacatccattttga 5944594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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