View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2901_low_6 (Length: 271)
Name: NF2901_low_6
Description: NF2901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2901_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 1890717 - 1890958
Alignment:
| Q |
11 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgct |
110 |
Q |
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| T |
1890717 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgct |
1890816 |
T |
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| Q |
111 |
attggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtatataacaacttagtac |
210 |
Q |
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| T |
1890817 |
attggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtatacaacaacttagtac |
1890916 |
T |
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| Q |
211 |
atgtttagattgacggtaaatttgtcaggttcatcacactgt |
252 |
Q |
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| T |
1890917 |
atgtttagattgacggtaaatttgtcaggttcatcacactgt |
1890958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 1884090 - 1884245
Alignment:
| Q |
28 |
ttgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattct |
127 |
Q |
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|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||| |
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| T |
1884090 |
ttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttct |
1884189 |
T |
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| Q |
128 |
ccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaa |
183 |
Q |
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| T |
1884190 |
ccttcctatcactttttttagaagaaggtaagtttgacagaatcacgacgttagaa |
1884245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 1895567 - 1895695
Alignment:
| Q |
11 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||||| |
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| T |
1895567 |
cataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgct |
1895666 |
T |
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| Q |
111 |
attggtactgctattctccttcctatcac |
139 |
Q |
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| T |
1895667 |
gttggtacttctgttcttcttcctgtcac |
1895695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 1911038 - 1911131
Alignment:
| Q |
26 |
tattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtact |
119 |
Q |
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| T |
1911038 |
tattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtact |
1911131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 1878084 - 1878189
Alignment:
| Q |
34 |
tggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcc |
133 |
Q |
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|||||||| ||| ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
1878084 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcc |
1878183 |
T |
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| Q |
134 |
tatcac |
139 |
Q |
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|||||| |
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| T |
1878184 |
tatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 1902000 - 1902083
Alignment:
| Q |
33 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggt |
116 |
Q |
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| T |
1902000 |
atggctttactcactttgttcaaagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 11537528 - 11537577
Alignment:
| Q |
33 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaa |
82 |
Q |
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| T |
11537528 |
atgggtttgctcactttgttcaaagcagcaccactgcaagggatgaacaa |
11537577 |
T |
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