View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2901_low_9 (Length: 250)
Name: NF2901_low_9
Description: NF2901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2901_low_9 |
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| [»] scaffold0289 (1 HSPs) |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: scaffold0289 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 18564 - 18349
Alignment:
| Q |
23 |
acttatattcaattgacttatcttcaaaccatcttactggaaaaatcccaaaggagttgggcaatttgactaagttgggtagactctttttaagcaacaa |
122 |
Q |
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| T |
18564 |
acttatattcaattgacttatcttcaaatcatctcacaggaaaaattccaaaggagttgggcaatttgactaagttgggtagactctttttaagcaacaa |
18465 |
T |
|
| Q |
123 |
ccatctttctggcaattttcctacacaaatagcatcgttaaaagaacttgaaatcatagatgttgcagaaaataatctaaatggcttcatcagaaaagaa |
222 |
Q |
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| T |
18464 |
ccatctttctggcaatgttcctacacaaatagcatcattaaaagaacttgaaatcttagatgttgcagaaaataatctaaatggcttcatcagaaaagaa |
18365 |
T |
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| Q |
223 |
cttgtcattttgccta |
238 |
Q |
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|||||||||||||||| |
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| T |
18364 |
cttgtcattttgccta |
18349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 15665696 - 15665481
Alignment:
| Q |
23 |
acttatattcaattgacttatcttcaaaccatcttactggaaaaatcccaaaggagttgggcaatttgactaagttgggtagactctttttaagcaacaa |
122 |
Q |
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|||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15665696 |
acttatattcaattgacttatcttcaaatcatctcacaggaaaaattccaaaggagttgggcaatttgactaagttgggtagactctttttaagcaacaa |
15665597 |
T |
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| Q |
123 |
ccatctttctggcaattttcctacacaaatagcatcgttaaaagaacttgaaatcatagatgttgcagaaaataatctaaatggcttcatcagaaaagaa |
222 |
Q |
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| T |
15665596 |
ccatctttctggcaatgttcctacacaaatagcatcattaaaagaacttgaaatcttagatgttgcagaaaataatctaaatggcttcatcagaaaagaa |
15665497 |
T |
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| Q |
223 |
cttgtcattttgccta |
238 |
Q |
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| T |
15665496 |
cttgtcattttgccta |
15665481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 15677551 - 15677317
Alignment:
| Q |
2 |
ccgaactcggtgaagcaacacacttatattcaattgacttatcttcaaaccatcttactggaaaaatcccaaaggagttgggcaatttgactaagttggg |
101 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||||| |||||| |
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| T |
15677551 |
ccgaacttggtgaagcaacaaacttatattcaattgacttatcttcaaaccatcttattggtaaaattccaaaggagttaggcaacttgactatgttggg |
15677452 |
T |
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| Q |
102 |
tagactctttttaagcaacaaccatctttctggcaattttcctacacaaatagcatcgttaaaagaacttgaaatcatagatgttgcagaaaataatcta |
201 |
Q |
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|||||||| |||||||||||||||||||||||| ||| |||| |||||| ||||| ||||| | |||||||| | ||||||||||||||||||||||| |
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| T |
15677451 |
tagactctatttaagcaacaaccatctttctggtaatgttccggtacaaattgcatcattaaagggacttgaaaccttagatgttgcagaaaataatcta |
15677352 |
T |
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| Q |
202 |
aatggcttcatcagaaaagaacttgtcattttgcc |
236 |
Q |
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| T |
15677351 |
agcggtttcatcccaaaacaacttgccattttgcc |
15677317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15671150 - 15670915
Alignment:
| Q |
1 |
cccgaactcggtgaagcaacacacttatattcaattgacttatcttcaaaccatcttactggaaaaatcccaaaggagttgggcaatttgactaagttgg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | ||||| ||||||| ||||| |
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| T |
15671150 |
cccgaactcggtgaagcaacaaacttatattcaattgacttatcatcaaaccatctaactggaaaaattccaaaggagataggcaacttgactatgttgg |
15671051 |
T |
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| Q |
101 |
gtagactctttttaagcaacaaccatctttctggcaattttcctacacaaatagcatcgttaaaagaacttgaaatcatagatgttgcagaaaataatct |
200 |
Q |
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| T |
15671050 |
gtagactctatttaagaaacaaccatctttctggtaatgttccggtacgaattgcatcgttaaagggacttgaaaccttagttgttgcagcaaataatct |
15670951 |
T |
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| Q |
201 |
aaatggcttcatcagaaaagaacttgtcattttgcc |
236 |
Q |
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|| ||| |||||| |||| |||||| ||||||||| |
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| T |
15670950 |
aagtggtttcatcccaaaacaacttgccattttgcc |
15670915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 12463 - 12498
Alignment:
| Q |
43 |
tcttcaaaccatcttactggaaaaatcccaaaggag |
78 |
Q |
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| T |
12463 |
tcttcaaaccatcttactggaaaaattccaaaggag |
12498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 13106 - 13141
Alignment:
| Q |
43 |
tcttcaaaccatcttactggaaaaatcccaaaggag |
78 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
13106 |
tcttcaaaccatcttactggaaaaattccaaaggag |
13141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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