View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2902_high_1 (Length: 533)

Name: NF2902_high_1
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2902_high_1
NF2902_high_1
[»] chr4 (17 HSPs)
chr4 (18-507)||(49108599-49109088)
chr4 (256-482)||(49106520-49106744)
chr4 (274-482)||(50077190-50077397)
chr4 (333-529)||(11652336-11652532)
chr4 (357-530)||(3461085-3461258)
chr4 (227-466)||(49533638-49533868)
chr4 (394-530)||(21503706-21503842)
chr4 (367-478)||(26998735-26998846)
chr4 (367-472)||(26984668-26984773)
chr4 (367-478)||(48205832-48205943)
chr4 (368-471)||(41013548-41013651)
chr4 (402-475)||(35806165-35806238)
chr4 (373-473)||(26982549-26982646)
chr4 (373-426)||(6431957-6432010)
chr4 (69-110)||(49533937-49533978)
chr4 (420-473)||(54677580-54677633)
chr4 (371-407)||(34481155-34481191)
[»] chr6 (7 HSPs)
chr6 (274-482)||(10795881-10796088)
chr6 (274-482)||(10791643-10791850)
chr6 (366-482)||(30521242-30521358)
chr6 (368-478)||(8875691-8875803)
chr6 (409-482)||(11333273-11333346)
chr6 (373-472)||(21216032-21216131)
chr6 (422-482)||(13136610-13136670)
[»] chr1 (22 HSPs)
chr1 (256-482)||(38175521-38175745)
chr1 (356-531)||(33988060-33988235)
chr1 (356-482)||(14654331-14654457)
chr1 (356-482)||(14664122-14664248)
chr1 (356-482)||(14669700-14669826)
chr1 (356-482)||(14706078-14706204)
chr1 (356-482)||(14708568-14708694)
chr1 (359-482)||(14683743-14683866)
chr1 (356-482)||(14716281-14716407)
chr1 (359-482)||(14681592-14681715)
chr1 (356-482)||(14674471-14674597)
chr1 (356-482)||(14679849-14679975)
chr1 (357-482)||(28366189-28366315)
chr1 (366-482)||(14652525-14652641)
chr1 (366-482)||(14662316-14662432)
chr1 (359-461)||(14676625-14676727)
chr1 (363-482)||(14667102-14667221)
chr1 (369-473)||(11872481-11872585)
chr1 (372-444)||(37422175-37422247)
chr1 (362-438)||(28698549-28698625)
chr1 (422-508)||(7448392-7448478)
chr1 (69-110)||(38175853-38175894)
[»] chr8 (14 HSPs)
chr8 (333-529)||(41841096-41841292)
chr8 (360-530)||(44878977-44879147)
chr8 (360-530)||(44880774-44880944)
chr8 (279-482)||(40054225-40054428)
chr8 (363-482)||(10944390-10944509)
chr8 (366-465)||(37682057-37682156)
chr8 (368-482)||(37679757-37679871)
chr8 (383-530)||(44582870-44583017)
chr8 (358-466)||(42555090-42555198)
chr8 (333-440)||(42220879-42220985)
chr8 (333-439)||(42091988-42092093)
chr8 (359-409)||(42872514-42872564)
chr8 (432-477)||(33577710-33577755)
chr8 (426-482)||(42554653-42554709)
[»] chr5 (7 HSPs)
chr5 (333-521)||(3643607-3643795)
chr5 (272-482)||(7524875-7525084)
chr5 (356-482)||(1716442-1716569)
chr5 (370-478)||(4103249-4103357)
chr5 (368-529)||(16037861-16038020)
chr5 (399-479)||(5350672-5350752)
chr5 (373-437)||(19261152-19261216)
[»] chr2 (26 HSPs)
chr2 (290-482)||(43849973-43850165)
chr2 (356-531)||(9026776-9026952)
chr2 (356-480)||(30731998-30732122)
chr2 (360-482)||(32918074-32918196)
chr2 (365-482)||(2841008-2841125)
chr2 (356-530)||(8973302-8973477)
chr2 (363-482)||(30733985-30734104)
chr2 (363-531)||(9008018-9008187)
chr2 (356-529)||(9030388-9030557)
chr2 (356-478)||(9020837-9020960)
chr2 (368-482)||(19232391-19232504)
chr2 (356-440)||(9032043-9032127)
chr2 (358-446)||(9023439-9023527)
chr2 (356-433)||(8979312-8979389)
chr2 (356-507)||(9016483-9016638)
chr2 (357-479)||(8992139-8992262)
chr2 (359-453)||(8984686-8984780)
chr2 (373-473)||(10763878-10763978)
chr2 (370-482)||(35701893-35702005)
chr2 (356-478)||(8988445-8988568)
chr2 (368-509)||(6471674-6471813)
chr2 (394-482)||(17225654-17225743)
chr2 (397-482)||(17275862-17275947)
chr2 (32-167)||(43849750-43849884)
chr2 (422-482)||(8912990-8913052)
chr2 (369-404)||(39814115-39814150)
[»] chr7 (2 HSPs)
chr7 (366-482)||(27134511-27134627)
chr7 (372-482)||(8128149-8128258)
[»] chr3 (1 HSPs)
chr3 (368-414)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (417-526)||(5447-5556)


Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 49109088 - 49108599
Alignment:
Q  18 ttattaagtgaatatagccttcaaattctgaaacatgatcattactcaaaataaaattttgtgtgcgtaggctcatagtttgtatgattgattgaaagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  49109088 ttattaagtgaatatagccttcaaattctgaaacatgatcattactcaaaataaaatt--gtgtgcgtaggctcatagtttgtatgattgattgaa-gac 49108992  T
Q  118 tattggaatttgagatataatatatttatttcacattttgatactggaggtattgttttgtatctattgtgtattcaagaatctgtcatcacgttaaaaa 217  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108991 tatttgaatttgagatatgatatatttatttcacattttgatactggaggtattgttttgtatctattgtgtattcaagaatctgtcatcacgttaaaaa 49108892  T
Q  218 attaatga-----aggaaacgaaacttggcagcagatggtttataagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgagga 312  Q
    ||||||||     |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  49108891 attaatgatttaaaggaaacgaaacttagcagcagatggtttataagagtcagtcacaa--ggtggtactgcatataagtcccacatcgggtaataagga 49108794  T
Q  313 aaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 412  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108793 aaggaactgaatagacagttgatataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 49108694  T
Q  413 cttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattg 507  Q
    |||||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||    
T  49108693 cttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttgagggggagaagtcatcacagtagcttgctattg 49108599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 256 - 482
Target Start/End: Complemental strand, 49106744 - 49106520
Alignment:
Q  256 taagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcct 355  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||     
T  49106744 taagagtcagtcacaa--ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagcca 49106647  T
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  49106646 ccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacg 49106547  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  49106546 atattaaattacttttttgagggggag 49106520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 274 - 482
Target Start/End: Complemental strand, 50077397 - 50077190
Alignment:
Q  274 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacct 373  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||||||| |   |||||||||||||||||    
T  50077397 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 50077299  T
Q  374 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttttt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||  ||||| |||||||||||||||||||    
T  50077298 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaattactttttt 50077199  T
Q  474 gagggggag 482  Q
    |||||||||    
T  50077198 gagggggag 50077190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 333 - 529
Target Start/End: Complemental strand, 11652532 - 11652336
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctga 432  Q
    ||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11652532 gatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 11652433  T
Q  433 tatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 529  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| |   |   |||||||||||||||| | |||| ||||||||||||||    
T  11652432 tatgtggcccaatgggtcacacgatattaaattatttttttgagggggagaagccactccaatagcttgctattgggcttcttgagtgtcgcctatg 11652336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 357 - 530
Target Start/End: Complemental strand, 3461258 - 3461085
Alignment:
Q  357 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacga 456  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacga 3461159  T
Q  457 tattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 530  Q
    ||||||||||||||||| |||||||| |   ||  |||||||||||||||| ||||||||||||||| ||||||    
T  3461158 tattaaattacttttttaagggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtctatgc 3461085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 227 - 466
Target Start/End: Complemental strand, 49533868 - 49533638
Alignment:
Q  227 ggaaacgaaacttggcagcagatggtttataagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatag 326  Q
    ||||||||||| | |||||||||||| | ||||||||||||||||||  |||||||||||| |||||||||||||| |||||| ||||| |||||| |||    
T  49533868 ggaaacgaaacatagcagcagatggtgtgtaagagtcagtcacaaaa--tggtactgcataaaagtcccacatcggctaatgaagaaagaaactgattag 49533771  T
Q  327 acagttgatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaat 426  Q
    ||||||||||||||| ||||||||| ||  | || |||| ||||||||||||||||  ||||||||||||||||| | ||||||||||||     |||||    
T  49533770 acagttgatataaaaccagaagccagcccttattccaacccatacctttctcggcc-cttggctaagatcaagtgca-tatctgttctta-----ttaat 49533678  T
Q  427 atctgatatgtggcccaatgagtcacacgatattaaatta 466  Q
    |||||||||||  | ||||  |||||||||||||||||||    
T  49533677 atctgatatgttactcaataggtcacacgatattaaatta 49533638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 394 - 530
Target Start/End: Original strand, 21503706 - 21503842
Alignment:
Q  394 atcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcaca 493  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| | | ||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgagggggagaagtcatcaca 21503805  T
Q  494 atagcttgctattgagtttctcgagtgtcgcctatgc 530  Q
    |||||||||||||||  ||||| |||||||| |||||    
T  21503806 atagcttgctattgaacttctcaagtgtcgcttatgc 21503842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  367 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  467 cttttttgaggg 478  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 367 - 472
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  367 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  467 cttttt 472  Q
    ||||||    
T  26984673 cttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 367 - 478
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  367 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 466  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| |  ||||||||| |||||||| ||| ||  | ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  467 cttttttgaggg 478  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 471
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 467  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| | |||||||||||||||||| |||| |  ||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  468 tttt 471  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  402 tagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttga 475  Q
    |||||| |||||||||||| ||||||| ||||||||   | |||||||| ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 473
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  373 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 472  Q
    ||||||||||| |||||||||||||||||||| |||||   |||| || ||| ||||| ||||||||  |||||| | ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  373 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaat 426  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| || |||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 49533978 - 49533937
Alignment:
Q  69 taaaattttgtgtgcgtaggctcatagtttgtatgattgatt 110  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  49533978 taaaattttgtgtgtgtggcctcatagtttgtatgattgatt 49533937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 54677580 - 54677633
Alignment:
Q  420 ggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttttt 473  Q
    ||||||| | |||||||||| | ||||  |||||||||||||||||||||||||    
T  54677580 ggttaatgtttgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  371 cctttctcggccttttggctaagatcaagtgtagtat 407  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 274 - 482
Target Start/End: Complemental strand, 10796088 - 10795881
Alignment:
Q  274 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacct 373  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||| ||||||||| |   |||||||||||||||||    
T  10796088 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactgagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 10795990  T
Q  374 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttttt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  10795989 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaattactttttt 10795890  T
Q  474 gagggggag 482  Q
    |||||||||    
T  10795889 gagggggag 10795881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 274 - 482
Target Start/End: Complemental strand, 10791850 - 10791643
Alignment:
Q  274 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacct 373  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||||||| |   |||||||||||||||||    
T  10791850 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccaactcttctttcaactcatacct 10791752  T
Q  374 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttttt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||| |||||||||||||||||||    
T  10791751 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaattactttttt 10791652  T
Q  474 gagggggag 482  Q
    |||||||||    
T  10791651 gagggggag 10791643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 482
Target Start/End: Original strand, 30521242 - 30521358
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 465  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  466 acttttttgagggggag 482  Q
      |||||||||||||||    
T  30521342 tattttttgagggggag 30521358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 478
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaat--t 465  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||   | ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  466 acttttttgaggg 478  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 409 - 482
Target Start/End: Original strand, 11333273 - 11333346
Alignment:
Q  409 tgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 482  Q
    |||||||||||| |||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgagggggag 11333346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 373 - 472
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  373 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 472  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||| ||||||||| ||||||||| |||||| |||||  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 13136610 - 13136670
Alignment:
Q  422 ttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 482  Q
    |||||||||||||||||| ||||||   ||||||||||||||||||||||||||| |||||    
T  13136610 ttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggag 13136670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 256 - 482
Target Start/End: Complemental strand, 38175745 - 38175521
Alignment:
Q  256 taagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcct 355  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||| |||| | || |||||| |||||||| |||| || |  ||    
T  38175745 taagagtcggtcacaa--ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatacagttcatataaaagcagatgcgaggct 38175648  T
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| ||||||||    
T  38175647 tcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacg 38175548  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  38175547 atattaaattacttttttgagggggag 38175521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 356 - 531
Target Start/End: Original strand, 33988060 - 33988235
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  33988060 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacg 33988159  T
Q  456 atattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 531  Q
    |||||||||||||||||| ||||||||     ||  |||||||||||||||| |||| || |||||||| ||||||    
T  33988160 atattaaattacttttttaagggggagaggccatttcaatagcttgctattgggtttttcaagtgtcgcttatgct 33988235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 356 - 482
Target Start/End: Complemental strand, 14654457 - 14654331
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  14654457 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacg 14654358  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14654357 atattaaattacttttttgagggggag 14654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 356 - 482
Target Start/End: Complemental strand, 14664248 - 14664122
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  14664248 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacg 14664149  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14664148 atattaaattacttttttgagggggag 14664122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 356 - 482
Target Start/End: Complemental strand, 14669826 - 14669700
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  14669826 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacg 14669727  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14669726 atattaaattacttttttgagggggag 14669700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 14706078 - 14706204
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  14706078 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacg 14706177  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14706178 atattaaattacttttttgagggggag 14706204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 14708568 - 14708694
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  14708568 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacg 14708667  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14708668 atattaaattacttttttgagggggag 14708694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 359 - 482
Target Start/End: Original strand, 14683743 - 14683866
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14683842  T
Q  459 ttaaattacttttttgagggggag 482  Q
    ||||||||||||||||||||||||    
T  14683843 ttaaattacttttttgagggggag 14683866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 14716281 - 14716407
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||  |||||||    
T  14716281 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacg 14716380  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14716381 atattaaattacttttttgagggggag 14716407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 359 - 482
Target Start/End: Original strand, 14681592 - 14681715
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 458  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14681691  T
Q  459 ttaaattacttttttgagggggag 482  Q
    ||||||||||||||||||||||||    
T  14681692 ttaaattacttttttgagggggag 14681715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 14674471 - 14674597
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| |    
T  14674471 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14674570  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14674571 atattaaattacttttttgagggggag 14674597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 14679849 - 14679975
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| |    
T  14679849 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14679948  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||    
T  14679949 atattaaattacttttttgagggggag 14679975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 357 - 482
Target Start/End: Complemental strand, 28366315 - 28366189
Alignment:
Q  357 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtg-gcccaatgagtcacacg 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacg 28366216  T
Q  456 atattaaattacttttttgagggggag 482  Q
    |||||||||||||||||| ||||||||    
T  28366215 atattaaattacttttttaagggggag 28366189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 366 - 482
Target Start/End: Original strand, 14652525 - 14652641
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T
Q  466 acttttttgagggggag 482  Q
    |||||||||||||||||    
T  14652625 acttttttgagggggag 14652641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 366 - 482
Target Start/End: Original strand, 14662316 - 14662432
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T
Q  466 acttttttgagggggag 482  Q
    |||||||||||||||||    
T  14662416 acttttttgagggggag 14662432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 359 - 461
Target Start/End: Original strand, 14676625 - 14676727
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14676724  T
Q  459 tta 461  Q
    |||    
T  14676725 tta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 363 - 482
Target Start/End: Complemental strand, 14667221 - 14667102
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaa 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||  ||||| ||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaa 14667122  T
Q  463 attacttttttgagggggag 482  Q
    ||||||||||  ||||||||    
T  14667121 attactttttctagggggag 14667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 11872585 - 11872481
Alignment:
Q  369 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattact 468  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  469 ttttt 473  Q
    |||||    
T  11872485 ttttt 11872481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  372 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaa 444  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 28698549 - 28698625
Alignment:
Q  362 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtg 438  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || ||||||  ||||||| |||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 508
Target Start/End: Complemental strand, 7448478 - 7448392
Alignment:
Q  422 ttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattga 508  Q
    |||||||||||||||||| | ||||| | | |||||||| |||||||||||||| ||| || ||  |||||||||| ||||||||||    
T  7448478 ttaatatctgatatgtggtcaaatgaattatacgatattgaattacttttttgaagggaagaaaccatcacaatagtttgctattga 7448392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 38175894 - 38175853
Alignment:
Q  69 taaaattttgtgtgcgtaggctcatagtttgtatgattgatt 110  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  38175894 taaaattttgtgtgtgtggcctcatagtttgtatgattgatt 38175853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 333 - 529
Target Start/End: Complemental strand, 41841292 - 41841096
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctga 432  Q
    ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41841292 gatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 41841193  T
Q  433 tatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 529  Q
    ||||||| |||||| |||||||||||||||||||||||||||| |||||| |   | | |||||||||||||||| | |||||||||||||||||||    
T  41841192 tatgtggtccaatgggtcacacgatattaaattacttttttgatggggagaagccaccccaatagcttgctattgggcttctcgagtgtcgcctatg 41841096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 360 - 530
Target Start/End: Original strand, 44878977 - 44879147
Alignment:
Q  360 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44879076  T
Q  460 taaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 530  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||  |||| ||||||||| |||||    
T  44879077 taaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgc 44879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 360 - 530
Target Start/End: Complemental strand, 44880944 - 44880774
Alignment:
Q  360 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44880845  T
Q  460 taaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 530  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||  |||| ||||||||| |||||    
T  44880844 taaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgc 44880774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 279 - 482
Target Start/End: Original strand, 40054225 - 40054428
Alignment:
Q  279 tactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacctttctc 378  Q
    ||||||||| |||||||||||||  |||||| |||||||||||| |||||| | |||||||||  ||| || |  |    ||| || |||||||||||||    
T  40054225 tactgcataaaagtcccacatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctcattttaattcatacctttctc 40054324  T
Q  379 ggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgaggg 478  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  40054325 ggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaattacttttttgaggg 40054424  T
Q  479 ggag 482  Q
    ||||    
T  40054425 ggag 40054428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 363 - 482
Target Start/End: Complemental strand, 10944509 - 10944390
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaa 462  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||  ||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaa 10944410  T
Q  463 attacttttttgagggggag 482  Q
    ||||||||||||| ||||||    
T  10944409 attacttttttgatggggag 10944390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 366 - 465
Target Start/End: Original strand, 37682057 - 37682156
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 465  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 368 - 482
Target Start/End: Original strand, 37679757 - 37679871
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  468 ttttttgagggggag 482  Q
    ||| |||||||||||    
T  37679857 tttattgagggggag 37679871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 44582870 - 44583017
Alignment:
Q  383 ttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||  |   | |||||||||||||||||||||||| |||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgagggagag 44582969  T
Q  483 taattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 530  Q
     | | |||||||||| |||||||||  ||| | |||||||| ||||||    
T  44582970 aagtcatcacaatagtttgctattggattttttgagtgtcgtctatgc 44583017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 358 - 466
Target Start/End: Complemental strand, 42555198 - 42555090
Alignment:
Q  358 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgat 457  Q
    |||||||||||||||||||| |  |||||||||||||||||||| || ||||||| ||||||| ||||||| ||||||||||  |||||| |||||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgat 42555099  T
Q  458 attaaatta 466  Q
    |||||||||    
T  42555098 attaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 333 - 440
Target Start/End: Complemental strand, 42220985 - 42220879
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctga 432  Q
    ||||||||| |||| || | | || |||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| || |||||||||||    
T  42220985 gatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctga 42220887  T
Q  433 tatgtggc 440  Q
    ||||||||    
T  42220886 tatgtggc 42220879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 42091988 - 42092093
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctga 432  Q
    ||||||||| ||||||| | |  |||||| |||||||||||||||  |||||||| |||| || ||||||| ||| |||||||||||| |||||||||||    
T  42091988 gatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctga 42092086  T
Q  433 tatgtgg 439  Q
    |||||||    
T  42092087 tatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 33577755 - 33577710
Alignment:
Q  432 atatgtggcccaatgagtcacacgatattaaattacttttttgagg 477  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  33577755 atatgtggcctaatgagtcacacaatattaaattacttttttgagg 33577710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 42554709 - 42554653
Alignment:
Q  426 tatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 482  Q
    ||||||||||||||  |||||| | |||||||||||||||| |||||||||||||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgagggggag 42554653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 333 - 521
Target Start/End: Original strand, 3643607 - 3643795
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctga 432  Q
    ||||||||| ||||||| |  ||  |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3643607 gatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 3643706  T
Q  433 tatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgt 521  Q
    ||||||||||| || |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||    
T  3643707 tatgtggcccattgggtcacacgatattaaattacttttttaagggggagaaactatcacaatagcttgctattgggtttctcgagtgt 3643795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 272 - 482
Target Start/End: Original strand, 7524875 - 7525084
Alignment:
Q  272 aaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatac 371  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| || | || |     | |||||| ||||||    
T  7524875 aaggtggtgctgcataaaagtcccacatcgggtaatgaagaaaagaactgagtagacagtggatataaaagca-atgcaaggtgttgtttcaagtcatac 7524973  T
Q  372 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttt 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||  |||||||||||||||||||||||    
T  7524974 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaattactttt 7525073  T
Q  472 ttgagggggag 482  Q
    |||||||||||    
T  7525074 ttgagggggag 7525084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 356 - 482
Target Start/End: Complemental strand, 1716569 - 1716442
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtgg-cccaatgagtcacac 454  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    
T  1716569 atcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacac 1716470  T
Q  455 gatattaaattacttttttgagggggag 482  Q
    ||||||||||||||||||| ||||||||    
T  1716469 gatattaaattacttttttaagggggag 1716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 370 - 478
Target Start/End: Original strand, 4103249 - 4103357
Alignment:
Q  370 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagt-cacacgatattaaattact 468  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaat-agtccacacgatattaaattgct 4103347  T
Q  469 tttttgaggg 478  Q
    ||||| ||||    
T  4103348 ttttttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 529
Target Start/End: Original strand, 16037861 - 16038020
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 467  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||| | |||| |||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  468 ttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 529  Q
    |||||||| ||| |  | | ||||||| ||||||||| || | |||||| ||||||| ||||    
T  16037959 ttttttgaagggaaaaagtcatcacaagagcttgctaatgggcttctcgtgtgtcgcttatg 16038020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 479
Target Start/End: Original strand, 5350672 - 5350752
Alignment:
Q  399 gtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggg 479  Q
    ||||||||||| || ||||||| ||||||||||||||||||  |||||   ||||||||||||||||  ||| ||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgagggg 5350752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  373 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgt 437  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| | | ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 290 - 482
Target Start/End: Original strand, 43849973 - 43850165
Alignment:
Q  290 agtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagcc-atcctatctttcaactcatacctttctcggccttttgg 388  Q
    |||||||||||||||||| | ||||||| |||| |||||||  ||||||||| |||| ||  | ||| | ||||||||||||||||||||||||||||||    
T  43849973 agtcccacatcgggtaatcaagaaaggatctgagtagacagaggatataaaagcagatgcgtagcct-tatttcaactcatacctttctcggccttttgg 43850071  T
Q  389 ctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  43850072 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaatcacttttttgagggggag 43850165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 356 - 531
Target Start/End: Original strand, 9026776 - 9026952
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-ac 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||| ||    
T  9026776 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaac 9026875  T
Q  455 gatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 531  Q
      |||||||||||||||||||| |||||  |  ||  |||||||||||||||| ||||||| |||||||||||||||    
T  9026876 agtattaaattacttttttgagtgggagagaccatttcaatagcttgctattgggtttctcaagtgtcgcctatgct 9026952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 356 - 480
Target Start/End: Original strand, 30731998 - 30732122
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||  |||||||    
T  30731998 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacg 30732097  T
Q  456 atattaaattacttttttgaggggg 480  Q
    |||||||||||||||||||||||||    
T  30732098 atattaaattacttttttgaggggg 30732122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 360 - 482
Target Start/End: Original strand, 32918074 - 32918196
Alignment:
Q  360 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatat 32918173  T
Q  460 taaattacttttttgagggggag 482  Q
    |||||||||||||||||||||||    
T  32918174 taaattacttttttgagggggag 32918196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 365 - 482
Target Start/End: Complemental strand, 2841125 - 2841008
Alignment:
Q  365 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaat 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||  ||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaat 2841026  T
Q  465 tacttttttgagggggag 482  Q
    ||||||||||||||||||    
T  2841025 tacttttttgagggggag 2841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 356 - 530
Target Start/End: Original strand, 8973302 - 8973477
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-ac 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  ||||||||||| ||||| ||    
T  8973302 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaac 8973401  T
Q  455 gatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 530  Q
     |||||||||||||||||| ||||||||  |  ||  |||||||||||| ||| ||||||| ||||| || |||||    
T  8973402 aatattaaattacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgc 8973477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 363 - 482
Target Start/End: Original strand, 30733985 - 30734104
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaa 462  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| ||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 30734084  T
Q  463 attacttttttgagggggag 482  Q
    ||||||||||| ||||||||    
T  30734085 attactttttttagggggag 30734104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 363 - 531
Target Start/End: Original strand, 9008018 - 9008187
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtca-cacgatatta 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||  ||  |||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  462 aattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 531  Q
    |||||||||||||||||||||     ||  ||||| |||| ||||| ||||||| |||||||||||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgct 9008187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 356 - 529
Target Start/End: Original strand, 9030388 - 9030557
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacg 455  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | ||||| ||||| |||||||     
T  9030388 atctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacaca 9030487  T
Q  456 atattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 529  Q
     ||||||||||||||||||||||||||   ||    |||||||||||||||| | ||||| |||||||||||||    
T  9030488 gtattaaattacttttttgagggggagaggtt----caatagcttgctattgggcttctcaagtgtcgcctatg 9030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 356 - 478
Target Start/End: Original strand, 9020837 - 9020960
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-ac 454  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||| ||    
T  9020837 atctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactac 9020936  T
Q  455 gatattaaattacttttttgaggg 478  Q
      ||||||||||||||||||||||    
T  9020937 agtattaaattacttttttgaggg 9020960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 368 - 482
Target Start/End: Complemental strand, 19232504 - 19232391
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 467  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||| || ||||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  468 ttttttgagggggag 482  Q
     ||||||||||||||    
T  19232405 ctttttgagggggag 19232391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 356 - 440
Target Start/End: Original strand, 9032043 - 9032127
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggc 440  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9032043 atctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggc 9032127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 9023439 - 9023527
Alignment:
Q  358 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatg 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||||    
T  9023439 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatg 9023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 356 - 433
Target Start/End: Original strand, 8979312 - 8979389
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  8979312 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 356 - 507
Target Start/End: Original strand, 9016483 - 9016638
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---aggttaatatctgatatgtggcccaatgagtcac 452  Q
    |||||| ||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||   || ||||||||||||  ||||||||||| |||||    
T  9016483 atcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcac 9016582  T
Q  453 -acgatattaaattacttttttgagggggagtaattatcacaatagcttgctattg 507  Q
     ||  ||||||||||||||||||||||||||  |  ||  ||||||||||||||||    
T  9016583 aacagtattaaattacttttttgagggggagagacaatttcaatagcttgctattg 9016638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 357 - 479
Target Start/End: Original strand, 8992139 - 8992262
Alignment:
Q  357 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-acg 455  Q
    ||||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| || | ||||||||||  ||||||||||| ||||| |      
T  8992139 tcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaata 8992238  T
Q  456 atattaaattacttttttgagggg 479  Q
    ||||||||||||||||||||||||    
T  8992239 atattaaattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 359 - 453
Target Start/End: Original strand, 8984686 - 8984780
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcaca 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||  |||||| |||| ||||||    
T  8984686 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgattagtggcctaatgggtcaca 8984780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 473
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  373 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 472  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||  |||||   || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  473 t 473  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 35701893 - 35702005
Alignment:
Q  370 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactt 469  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| || ||||||| |||||||||| ||||  |||||||||||||||  ||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttactt 35701992  T
Q  470 ttttgagggggag 482  Q
    |||||||||||||    
T  35701993 ttttgagggggag 35702005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 356 - 478
Target Start/End: Original strand, 8988445 - 8988568
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-ac 454  Q
    ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||  ||| | |||||  || | ||    
T  8988445 atctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaac 8988544  T
Q  455 gatattaaattacttttttgaggg 478  Q
     |||||||||||||||||||||||    
T  8988545 aatattaaattacttttttgaggg 8988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 509
Target Start/End: Complemental strand, 6471813 - 6471674
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 467  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||  || | ||||  ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  468 ttttttgagggggagtaattatcacaatagcttgctattgag 509  Q
    |||||| ||||| || | | |||| ||||| |||||||||||    
T  6471714 tttttt-aggggaagaagtcatcataatagtttgctattgag 6471674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 482
Target Start/End: Complemental strand, 17225743 - 17225654
Alignment:
Q  394 atcaagtgtagtatctgttctt-atcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 482  Q
    ||||||||||||||||||| || ||| | |||||| ||||||| ||| ||||||| ||| ||||||||||||||||||||||||| ||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgaggaggag 17225654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 482
Target Start/End: Original strand, 17275862 - 17275947
Alignment:
Q  397 aagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 482  Q
    |||||||||||  ||||||||||| | ||| | | |||||||| ||||||  |||||||||||| |||||| ||||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgagggggag 17275947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 43849750 - 43849884
Alignment:
Q  32 tagccttcaaattctgaaacatgatcattactcaaaataaaattttgtgtgcgtaggctcatagtttgtatgattgattgaaagactattggaatttgag 131  Q
    |||||||||| || ||||| || |  |||||||||||||||||| ||||||    | |||||||||||||||||| ||||  ||||||||  ||||||||    
T  43849750 tagccttcaacttgtgaaatatcacgattactcaaaataaaattgtgtgtg----gtctcatagtttgtatgattcattg-cagactatttaaatttgag 43849844  T
Q  132 atat-aat---atatttatttcacattttgatactggagg 167  Q
    |||| |||   ||||||||||  |||||||||||||||||    
T  43849845 atatgaatatgatatttatttaccattttgatactggagg 43849884  T

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Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 8912990 - 8913052
Alignment:
Q  422 ttaatatctgatatgtggcccaatgagtcacac--gatattaaattacttttttgagggggag 482  Q
    ||||||| | |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  8912990 ttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggag 8913052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  369 tacctttctcggccttttggctaagatcaagtgtag 404  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 482
Target Start/End: Original strand, 27134511 - 27134627
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 465  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  | |||||||||||||||||| | ||||||||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  466 acttttttgagggggag 482  Q
    |||||||||||||||||    
T  27134611 acttttttgagggggag 27134627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 482
Target Start/End: Original strand, 8128149 - 8128258
Alignment:
Q  372 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttt 471  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | || ||||||| |||||||||| |||||| ||||||| ||||||||||  |||     
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatg-gtcacacaatattaaatttatttc 8128247  T
Q  472 ttgagggggag 482  Q
    |||||||||||    
T  8128248 ttgagggggag 8128258  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 414  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 526
Target Start/End: Original strand, 5447 - 5556
Alignment:
Q  417 tcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcg 516  Q
    |||| |||||||||||||| ||| |||||   |||||||||||||||||  |||||||||| ||||     | |||||||||||||||||| || ||||     
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctca 5546  T
Q  517 agtgtcgcct 526  Q
    ||||||||||    
T  5547 agtgtcgcct 5556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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