View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2902_high_4 (Length: 410)
Name: NF2902_high_4
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2902_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 70 - 402
Target Start/End: Complemental strand, 2309641 - 2309309
Alignment:
| Q |
70 |
ttagcttcttcaatggtcagattctgttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcaaattctatgttaaagcgccgctattt |
169 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2309641 |
ttagcttcttcaatgttcagattctgttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcaaattctatgttaaagcaccgctattt |
2309542 |
T |
|
| Q |
170 |
gacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatgga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309541 |
gacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatgga |
2309442 |
T |
|
| Q |
270 |
ctttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagataaaa |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309441 |
ctttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagataaaa |
2309342 |
T |
|
| Q |
370 |
ctcactgaaattgcttttggtctaccctctctg |
402 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2309341 |
ttcactgaaattgcttttggtctaccctctctg |
2309309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 96 - 401
Target Start/End: Complemental strand, 2318751 - 2318449
Alignment:
| Q |
96 |
ttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcaaattctat-gttaaagcgccgctatttgacaacacattgtacactgaatacc |
194 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||| | |||||||| |||| ||||||||||||||||||| ||||||||| || ||| |
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| T |
2318751 |
ttaatcaatgttgtccattgtggattgcaaaaaatcgcattttgtttgaattctattgttacagcgccgctatttgacaacgcattgtacaa--aacacc |
2318654 |
T |
|
| Q |
195 |
atatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatggactttagaggatttacgcacatgtgc |
294 |
Q |
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|| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||| | ||| |
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| T |
2318653 |
atttctcagaacaatagcggtttgttcagattctgctacactatagccactatgtgacagcgttgtgttaatggactttagaggatttatgcacttatgc |
2318554 |
T |
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| Q |
295 |
gttgtggtgccgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagataaaactcactgaaattgcttttggtctac |
394 |
Q |
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| |||||| ||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| ||||||| ||||| |||||||||||||||| |
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| T |
2318553 |
g--gtggtgttgcactttgataattgattgttgtaagagacttgtttgaaattatatttgtttgattggataaaattcactacgattgcttttggtctac |
2318456 |
T |
|
| Q |
395 |
cctctct |
401 |
Q |
| |
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||||||| |
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| T |
2318455 |
cctctct |
2318449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 16950266 - 16950230
Alignment:
| Q |
215 |
tttgttcagattctgctacactatagccactatttga |
251 |
Q |
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|||||||| |||||||||| ||||||||||||||||| |
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| T |
16950266 |
tttgttcaaattctgctacgctatagccactatttga |
16950230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 18749293 - 18749341
Alignment:
| Q |
201 |
cggaacaatagctgtttgttcagattctgctacactatagccactattt |
249 |
Q |
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|||||||||||| ||||| || |||||||||||||||| ||||||||| |
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| T |
18749293 |
cggaacaatagcattttgtccaaattctgctacactataaccactattt |
18749341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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