View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2902_high_8 (Length: 312)
Name: NF2902_high_8
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2902_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 41563911 - 41564191
Alignment:
| Q |
14 |
gaacatttgccaaacagatggcacacgtggacgcacactgcgtaattaattannnnnnnnnnnnnnnnnnntaccatataatattgtgtttaataaaacn |
113 |
Q |
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| T |
41563911 |
gaacatttgccaaacagatggcacacgtggacgcacactgcgtaattaattaatttttaaaaaaaaa----taccatataatatcgtgtttaataaaaat |
41564006 |
T |
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| Q |
114 |
nnnnnncaag-cttatatctactccaacatcaacatcgtcatcttccaccaaaccatcatctttaccaccacaaaagtcaagcaagnnnnnnnnnctcat |
212 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
41564007 |
aaaaataaaaacttatatctactccaacatcaacatcgtcatcttccaccaaaccatcatcttcaccaccacaaaagtcaagcaagaaaaaaaaactcat |
41564106 |
T |
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| Q |
213 |
catcgtcaccgcnnnnnnnntcttgatcttcgagggttggnnnnnnnaggtgtgattttcctgggttgattttcaattaagtttt |
297 |
Q |
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|||||||||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
41564107 |
catcgtcaccgcaaaaaaaatcttgatcttcgtgggttggtttttttaggtgtgattttccagggttgattttcaattaagtttt |
41564191 |
T |
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