View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2902_low_1 (Length: 823)

Name: NF2902_low_1
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2902_low_1
NF2902_low_1
[»] scaffold0174 (2 HSPs)
scaffold0174 (67-674)||(31341-31937)
scaffold0174 (748-809)||(32011-32072)
[»] chr7 (2 HSPs)
chr7 (1-33)||(20558866-20558898)
chr7 (1-32)||(15716723-15716754)
[»] chr8 (3 HSPs)
chr8 (1-32)||(22274649-22274680)
chr8 (1-36)||(44088993-44089028)
chr8 (1-38)||(43284004-43284041)
[»] chr3 (1 HSPs)
chr3 (1-35)||(20887807-20887841)
[»] chr6 (3 HSPs)
chr6 (1-38)||(7153783-7153820)
chr6 (1-38)||(22997331-22997368)
chr6 (1-38)||(23791033-23791070)
[»] chr4 (1 HSPs)
chr4 (1-38)||(34353774-34353811)


Alignment Details
Target: scaffold0174 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 67 - 674
Target Start/End: Original strand, 31341 - 31937
Alignment:
Q  67 ggatattagtgttgtttttagcttatttcgtttggttcttaacatatctcgtgatgggttatattatccattgtactatggctttaatagtttctttttt 166  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||    
T  31341 ggatattagtgttgtttttagcttattttgtttggttcttaacatatctcgtaataggttatattatccattgtactatggctttaatagttt--ttttt 31438  T
Q  167 atttccattnnnnnnnttatctgaacatattagtttt-ttagtaatttaatctctattgagttatatatcatgacaaaattaatgattgaaattaattaa 265  Q
    |||||||||       | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  31439 atttccattaaaaaagt-atctgaacatattagtttttttagtaatttaatctctattgagttatatatcatgacaaaattaattattgaaattaataaa 31537  T
Q  266 agtaactcgttgacaaaataatacgatatgaaatggtggtacttatggatttaaacataacagtataagtggtacaatctatggatactgatgaaagaaa 365  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  31538 agtaactcgttgacaaaataatacgatatgaaatggcggtacttatggatttaaacgtaatagtataagtggtacaatctatggatactgatgaaagaaa 31637  T
Q  366 atttaattcaaggggaaaatggtgatannnnnnnnnnnnnaagcaaccaaaatatcctaccaaaattgatatctggaaaatcgaaccgagactacgagaa 465  Q
    |||||||||||||| ||||||||||||             ||| ||||||||||| ||||||||||||  ||  |||||||||||| ||||| | || ||    
T  31638 atttaattcaagggaaaaatggtgata----tttttttttaagaaaccaaaatattctaccaaaattggcatagggaaaatcgaactgagaccatgaaaa 31733  T
Q  466 gaacacttcaaggtttcaagttaacaccatatcaattcaagtggattaaacggttatattattaaatactagacatgaattaagataaagtgcatgcttt 565  Q
     |||||| ||||||   || ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  31734 caacactccaaggtcctaaattaacaccatatcaattcaagtggattaaacggttatattattaaata----acatgaattaagataaagtgcatgcttt 31829  T
Q  566 tcttagacatatcgactaaaattcacacataattttttgttttcattgatgttccatgagccctccatttattttannnnnnnggctcttccttctcctt 665  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||    
T  31830 tcttagacatatcgactaaaattcacacttaattttttgttttcattgatgttccatgagccctccatatattttattttttt-gctcttccttctcctt 31928  T

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Target: scaffold0174; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 748 - 809
Target Start/End: Original strand, 32011 - 32072
Alignment:
Q  748 acgtccatagttttgtcctcttcccgaactgtattcagtccctcctcccgaaccgccttcat 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  32011 acgtccatagttttgtcctcttcccgaactgtattcagtccctcctcccaaaccggcttcat 32072  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 20558866 - 20558898
Alignment:
Q  1 caatatccctaccaactgagctaaactcatgga 33  Q
    |||||||||||||||||||||||||||||||||    
T  20558866 caatatccctaccaactgagctaaactcatgga 20558898  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 15716723 - 15716754
Alignment:
Q  1 caatatccctaccaactgagctaaactcatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  15716723 caatatccctaccaactgagctaaactcatgg 15716754  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22274649 - 22274680
Alignment:
Q  1 caatatccctaccaactgagctaaactcatgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  22274649 caatatccctaccaactgagctaaactcatgg 22274680  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44088993 - 44089028
Alignment:
Q  1 caatatccctaccaactgagctaaactcatggagat 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  44088993 caatatctctaccaactgagctaaactcatggagat 44089028  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43284004 - 43284041
Alignment:
Q  1 caatatccctaccaactgagctaaactcatggagattc 38  Q
    ||||||||||||||||||||||||||||| || |||||    
T  43284004 caatatccctaccaactgagctaaactcacggggattc 43284041  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20887807 - 20887841
Alignment:
Q  1 caatatccctaccaactgagctaaactcatggaga 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  20887807 caatatccctaccaactgagctaaactcacggaga 20887841  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7153820 - 7153783
Alignment:
Q  1 caatatccctaccaactgagctaaactcatggagattc 38  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  7153820 caatatccctaccaactgagttaagctcatggagattc 7153783  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22997368 - 22997331
Alignment:
Q  1 caatatccctaccaactgagctaaactcatggagattc 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  22997368 caatatccctaccaactgagctaagctcacggagattc 22997331  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23791033 - 23791070
Alignment:
Q  1 caatatccctaccaactgagctaaactcatggagattc 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  23791033 caatatccctaccaactgagctaagctcacggagattc 23791070  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34353811 - 34353774
Alignment:
Q  1 caatatccctaccaactgagctaaactcatggagattc 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  34353811 caatatccctaccaactgagctaagctcacggagattc 34353774  T

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