View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2902_low_10 (Length: 367)
Name: NF2902_low_10
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2902_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11960112 - 11959998
Alignment:
| Q |
1 |
accaccagaactctcctctctctgccaacaaccttctggattttttcacacccttcaactttcatcttcgtcatcatttacacatgattcttcattacct |
100 |
Q |
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| T |
11960112 |
accacaagaactctcctctctctgccaacaaccttctggattttttcacacccttcaactttcatcttcgtcatcatttacacatgattcttcattacct |
11960013 |
T |
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| Q |
101 |
tcctcactttcaact |
115 |
Q |
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| T |
11960012 |
tcctcactttcaact |
11959998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 11959899 - 11959814
Alignment:
| Q |
214 |
tagatcccgaacacgaatccaaatttcgattcaattttggattttgggtttcgattttggtggaactgtgatttaggagatttcaa |
299 |
Q |
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| T |
11959899 |
tagatcccgaacacgaatccaaatttcgattcaattttggattttgggtttcgattttggtggaactgtgatttaggagatttcaa |
11959814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 1178893 - 1178836
Alignment:
| Q |
12 |
tctcctctctctgccaacaaccttctggattttttcacacccttcaactttcatcttc |
69 |
Q |
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| T |
1178893 |
tctcctctctctgacaacaagcttcttgattttttcacttccttcaaccttcatcttc |
1178836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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