View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2902_low_4 (Length: 432)
Name: NF2902_low_4
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2902_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 13554656 - 13554254
Alignment:
| Q |
19 |
actgcatcagatagagttgcatcacctttggtgtggtatttcactgtaatctttgcaatggatccaccatcagagccagccacaatttttgtctcgaatt |
118 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13554656 |
actgcatcagatagagttgcatcacctttggtgtgatatttaactgtaatcttagcaatggatccaccatcagagccagccacaatttttgtctcgaatt |
13554557 |
T |
|
| Q |
119 |
caactttctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgcctcatctactgcatctaatttgtgtagcacaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13554556 |
caactttctctagactttcatccaatcctgttcctcctactaagctatagttgtatccaaagtttgcctcatctactgcatctaatttgtgtagcacaaa |
13554457 |
T |
|
| Q |
219 |
gttggttttgccatctgcaatacaaccattgtaattatttatataattcttttttcgatacaagtaaagtttaactaaaaactctttcatttaaagatcg |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13554456 |
gttggttttgccatctgcaatacaaccattataattatttatataattcttttttcgatacaagtaaagtttaactaaaaactctttcatttaaagatcg |
13554357 |
T |
|
| Q |
319 |
atttgaactttaccgagtatcgttaatcatatgaatcatgtttttgaaggtccataattgttagacatactcctggaacaagcttatgtattgtctcctt |
418 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13554356 |
atttgaactttaccgagtatcgttaatcacatgaatcatgtttttgaaggtccataattgttagacatactcctggaacgagcttatgtattgtctcctt |
13554257 |
T |
|
| Q |
419 |
cat |
421 |
Q |
| |
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||| |
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| T |
13554256 |
cat |
13554254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 13530934 - 13530694
Alignment:
| Q |
19 |
actgcatcagatagagttgcatcacctttggtgtggtatttcactgtaatctttgcaatggatccaccatcagagccagccacaatttttgtctcgaatt |
118 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
13530934 |
actgcatcagatagaactgcatcacctttggtgtgatatttcactgaaatcttaacaatggatccaccatcagacccagcaacaatatttgtctcgaatt |
13530835 |
T |
|
| Q |
119 |
caactttctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgcctcatctactgcatctaatttgtgtagcacaaa |
218 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13530834 |
caactttctctaaactttcatccaaccctgttcctcctactaagctgtagttatatccatagtttgcctcatctactgcatctaatttgtgtagcacaaa |
13530735 |
T |
|
| Q |
219 |
gttggttttgccatctgcaatacaaccattgtaattattta |
259 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||| |
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| T |
13530734 |
gttggttttgccatctgcaatataaccattataattattta |
13530694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 13537797 - 13537569
Alignment:
| Q |
19 |
actgcatcagatagagttgcatcacctttggtgtggtatttcactgtaatctttgcaatggatccaccatcagagccagccacaatttttgtctcgaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13537797 |
actgcatcagatagagttgcatcacctttggtgtggtatttcactgaaatcttaacaatggatccaccatcagagccagccacaatacttgtctcgaatt |
13537698 |
T |
|
| Q |
119 |
caactttctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgcctcatctactgcatctaatttgtgtagcacaaa |
218 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||||| | ||| ||||||||||| |||||||| ||||| | ||| |||||||||||||||||| | |
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| T |
13537697 |
caactttttctaaactttcatccaaccctgttcctcctacaatgctatagttgtatcccaagtttgcttcatccattgcttctaatttgtgtagcacata |
13537598 |
T |
|
| Q |
219 |
gttggttttgccatctgcaatacaaccat |
247 |
Q |
| |
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|| |||||||||| || |||||||||||| |
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| T |
13537597 |
gtcggttttgccacctacaatacaaccat |
13537569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 13541832 - 13541630
Alignment:
| Q |
25 |
tcagatagagttgcatcacctttggtgtggtatttcactgtaatctttgcaatggatccaccatcagagccagccacaatttttgtctcgaattcaactt |
124 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||| |
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| T |
13541832 |
tcagatagaactgcatcacctttggtgtgatatttcactgaaatcttaacaatggatccaccatcagatccagccacaatatttgtctcaaattcaactt |
13541733 |
T |
|
| Q |
125 |
tctctagactttcatccaatcctgttcctcctactaagctgtagttgtatccaaagtttgcctcatctactgcatctaatttgtgtagcacaaagttggt |
224 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| | ||| |||||||||||||||||||||| ||| |
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| T |
13541732 |
tctctaaactttcatccaatcctgttcctcctactatgctatagttgtatcccaagtttgcctcatccattgcttctaatttgtgtagcacaaagtcggt |
13541633 |
T |
|
| Q |
225 |
ttt |
227 |
Q |
| |
|
||| |
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|
| T |
13541632 |
ttt |
13541630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 418
Target Start/End: Complemental strand, 13530516 - 13530348
Alignment:
| Q |
253 |
ttatttatataattcttttttcgatacaagtaaagtttaactaaaaactctttcatttaaagatcgatttgaactttaccgagtatcgttaatcatatga |
352 |
Q |
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||||||||||| |||||||||| ||| ||||| ||||| ||||||||||||||| |||||||||| ||||||||||||| ||| || | ||||| ||| |
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| T |
13530516 |
ttatttatatagttcttttttcaatataagtatagtttgactaaaaactctttcggttaaagatcgttttgaactttaccaagtgtcctgaatcacctga |
13530417 |
T |
|
| Q |
353 |
atca---tgtttttgaaggtccataattgttagacatactcctggaacaagcttatgtattgtctcctt |
418 |
Q |
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|||| | ||||||||||||||||||| |||||||| | | ||| ||||||||||||||||||||||| |
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| T |
13530416 |
atcattttttttttgaaggtccataattattagacatgcccttggtacaagcttatgtattgtctcctt |
13530348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 13485759 - 13485707
Alignment:
| Q |
37 |
gcatcacctttggtgtggtatttcactgtaatctttgcaatggatccaccatc |
89 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||||||||| ||||| |
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|
| T |
13485759 |
gcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatc |
13485707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 13492198 - 13492146
Alignment:
| Q |
37 |
gcatcacctttggtgtggtatttcactgtaatctttgcaatggatccaccatc |
89 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||||||||| ||||| |
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|
| T |
13492198 |
gcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatc |
13492146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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