View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2902_low_5 (Length: 431)

Name: NF2902_low_5
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2902_low_5
NF2902_low_5
[»] chr4 (12 HSPs)
chr4 (18-413)||(49108693-49109088)
chr4 (256-413)||(49106589-49106744)
chr4 (274-413)||(50077259-50077397)
chr4 (227-401)||(49533697-49533868)
chr4 (333-413)||(11652452-11652532)
chr4 (357-413)||(3461202-3461258)
chr4 (367-413)||(26984727-26984773)
chr4 (367-413)||(26998800-26998846)
chr4 (367-413)||(48205832-48205878)
chr4 (373-412)||(26982549-26982588)
chr4 (69-110)||(49533937-49533978)
chr4 (371-407)||(34481155-34481191)
[»] chr6 (4 HSPs)
chr6 (274-413)||(10795950-10796088)
chr6 (274-413)||(10791712-10791850)
chr6 (366-413)||(30521242-30521289)
chr6 (368-413)||(8875691-8875736)
[»] chr1 (21 HSPs)
chr1 (256-413)||(38175590-38175745)
chr1 (356-413)||(14654400-14654457)
chr1 (356-413)||(14664191-14664248)
chr1 (356-413)||(14669769-14669826)
chr1 (356-413)||(14706078-14706135)
chr1 (356-413)||(14708568-14708625)
chr1 (356-413)||(14716281-14716338)
chr1 (356-413)||(33988060-33988117)
chr1 (357-413)||(28366259-28366315)
chr1 (359-413)||(14676625-14676679)
chr1 (359-413)||(14683743-14683797)
chr1 (356-413)||(14674471-14674528)
chr1 (356-413)||(14679849-14679906)
chr1 (363-413)||(14667171-14667221)
chr1 (359-413)||(14681592-14681646)
chr1 (366-413)||(14652525-14652572)
chr1 (366-413)||(14662316-14662363)
chr1 (369-413)||(11872541-11872585)
chr1 (362-407)||(28698549-28698594)
chr1 (372-413)||(37422175-37422216)
chr1 (69-110)||(38175853-38175894)
[»] chr5 (4 HSPs)
chr5 (272-413)||(7524875-7525015)
chr5 (356-413)||(1716512-1716569)
chr5 (333-413)||(3643607-3643687)
chr5 (370-413)||(4103249-4103292)
[»] chr8 (11 HSPs)
chr8 (333-413)||(41841212-41841292)
chr8 (279-413)||(40054225-40054359)
chr8 (360-413)||(44878977-44879030)
chr8 (360-413)||(44880891-44880944)
chr8 (363-413)||(10944459-10944509)
chr8 (359-409)||(42872514-42872564)
chr8 (368-413)||(37679757-37679802)
chr8 (366-413)||(37682057-37682104)
chr8 (333-409)||(42220909-42220985)
chr8 (358-412)||(42555144-42555198)
chr8 (383-413)||(44582870-44582900)
[»] chr2 (21 HSPs)
chr2 (290-413)||(43849973-43850096)
chr2 (356-413)||(8973302-8973359)
chr2 (356-413)||(8979312-8979369)
chr2 (356-413)||(9026776-9026833)
chr2 (356-413)||(30731998-30732055)
chr2 (358-413)||(9023439-9023494)
chr2 (356-413)||(9032043-9032100)
chr2 (360-413)||(32918074-32918127)
chr2 (359-413)||(8984686-8984740)
chr2 (363-413)||(9008018-9008068)
chr2 (356-413)||(9020837-9020894)
chr2 (365-413)||(2841077-2841125)
chr2 (363-413)||(30733985-30734035)
chr2 (356-413)||(9030388-9030445)
chr2 (368-413)||(19232459-19232504)
chr2 (356-413)||(8988445-8988502)
chr2 (356-413)||(9016483-9016540)
chr2 (357-413)||(8992139-8992195)
chr2 (32-167)||(43849750-43849884)
chr2 (369-404)||(39814115-39814150)
chr2 (373-413)||(10763938-10763978)
[»] chr3 (1 HSPs)
chr3 (368-413)||(15758563-15758608)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 49109088 - 49108693
Alignment:
Q  18 ttattaagtgaatatagccttcaaattctgaaacatgatcattactcaaaataaaattttgtgtgcgtaggctcatagtttgtatgattgattgaaagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  49109088 ttattaagtgaatatagccttcaaattctgaaacatgatcattactcaaaataaaatt--gtgtgcgtaggctcatagtttgtatgattgattgaa-gac 49108992  T
Q  118 tattggaatttgagatataatatatttatttcacattttgatactggaggtattgttttgtatctattgtgtattcaagaatctgtcatcacgttaaaaa 217  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108991 tatttgaatttgagatatgatatatttatttcacattttgatactggaggtattgttttgtatctattgtgtattcaagaatctgtcatcacgttaaaaa 49108892  T
Q  218 attaatga-----aggaaacgaaacttggcagcagatggtttataagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgagga 312  Q
    ||||||||     |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  49108891 attaatgatttaaaggaaacgaaacttagcagcagatggtttataagagtcagtcacaa--ggtggtactgcatataagtcccacatcgggtaataagga 49108794  T
Q  313 aaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 412  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108793 aaggaactgaatagacagttgatataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 49108694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 49106744 - 49106589
Alignment:
Q  256 taagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcct 355  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||     
T  49106744 taagagtcagtcacaa--ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagcca 49106647  T
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106646 ccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 49106589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 274 - 413
Target Start/End: Complemental strand, 50077397 - 50077259
Alignment:
Q  274 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacct 373  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||||||| |   |||||||||||||||||    
T  50077397 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 50077299  T
Q  374 ttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50077298 ttctcggccttttggctaagatcaagtgtagtatctgttc 50077259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 227 - 401
Target Start/End: Complemental strand, 49533868 - 49533697
Alignment:
Q  227 ggaaacgaaacttggcagcagatggtttataagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatag 326  Q
    ||||||||||| | |||||||||||| | ||||||||||||||||||  |||||||||||| |||||||||||||| |||||| ||||| |||||| |||    
T  49533868 ggaaacgaaacatagcagcagatggtgtgtaagagtcagtcacaaaa--tggtactgcataaaagtcccacatcggctaatgaagaaagaaactgattag 49533771  T
Q  327 acagttgatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtg 401  Q
    ||||||||||||||| ||||||||| ||  | || |||| ||||||||||||||||  |||||||||||||||||    
T  49533770 acagttgatataaaaccagaagccagcccttattccaacccatacctttctcggcc-cttggctaagatcaagtg 49533697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 11652532 - 11652452
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652532 gatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 11652452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 3461258 - 3461202
Alignment:
Q  357 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3461202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 26984773 - 26984727
Alignment:
Q  367 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 26998846 - 26998800
Alignment:
Q  367 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26998800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 48205832 - 48205878
Alignment:
Q  367 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttc 48205878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 412
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  373 tttctcggccttttggctaagatcaagtgtagtatctgtt 412  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 49533978 - 49533937
Alignment:
Q  69 taaaattttgtgtgcgtaggctcatagtttgtatgattgatt 110  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  49533978 taaaattttgtgtgtgtggcctcatagtttgtatgattgatt 49533937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  371 cctttctcggccttttggctaagatcaagtgtagtat 407  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 274 - 413
Target Start/End: Complemental strand, 10796088 - 10795950
Alignment:
Q  274 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacct 373  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||| ||||||||| |   |||||||||||||||||    
T  10796088 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactgagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 10795990  T
Q  374 ttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10795989 ttctcggccttttggctaagatcaagtgtagtatctgttc 10795950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 274 - 413
Target Start/End: Complemental strand, 10791850 - 10791712
Alignment:
Q  274 ggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacct 373  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||| | | |||||||||||||||| ||||||||| |   |||||||||||||||||    
T  10791850 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccaactcttctttcaactcatacct 10791752  T
Q  374 ttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10791751 ttctcggccttttggctaagatcaagtgtagtatctgttc 10791712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 30521242 - 30521289
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttc 30521289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 8875691 - 8875736
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttc 8875736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 38175745 - 38175590
Alignment:
Q  256 taagagtcagtcacaaaaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcct 355  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||| |||| | || |||||| |||||||| |||| || |  ||    
T  38175745 taagagtcggtcacaa--ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatacagttcatataaaagcagatgcgaggct 38175648  T
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175647 tcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 38175590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 14654457 - 14654400
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654457 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14654400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 14664248 - 14664191
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664248 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 14669826 - 14669769
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669826 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14669769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 14706078 - 14706135
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706078 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14706135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 14708568 - 14708625
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708568 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14708625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 14716281 - 14716338
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716281 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14716338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 33988060 - 33988117
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988060 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 33988117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 28366315 - 28366259
Alignment:
Q  357 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 28366259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 14676625 - 14676679
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14676679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 14683743 - 14683797
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14683797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 14674471 - 14674528
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674471 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 14679849 - 14679906
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679849 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14679906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 14667221 - 14667171
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14667171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 14681592 - 14681646
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14681646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 14652525 - 14652572
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14652572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 14662316 - 14662363
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14662363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 11872585 - 11872541
Alignment:
Q  369 tacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttc 11872541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 28698549 - 28698594
Alignment:
Q  362 caactcatacctttctcggccttttggctaagatcaagtgtagtat 407  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 37422175 - 37422216
Alignment:
Q  372 ctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttc 37422216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 38175894 - 38175853
Alignment:
Q  69 taaaattttgtgtgcgtaggctcatagtttgtatgattgatt 110  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  38175894 taaaattttgtgtgtgtggcctcatagtttgtatgattgatt 38175853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 272 - 413
Target Start/End: Original strand, 7524875 - 7525015
Alignment:
Q  272 aaggtggtactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatac 371  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| || | || |     | |||||| ||||||    
T  7524875 aaggtggtgctgcataaaagtcccacatcgggtaatgaagaaaagaactgagtagacagtggatataaaagca-atgcaaggtgttgtttcaagtcatac 7524973  T
Q  372 ctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7524974 ctttctcggccttttggctaagatcaagtgtagtatctgttc 7525015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 1716569 - 1716512
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716569 atcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 1716512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 3643607 - 3643687
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||| ||||||| |  ||  |||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643607 gatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3643687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 4103249 - 4103292
Alignment:
Q  370 acctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||| || |||||| ||||||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttc 4103292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 41841292 - 41841212
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841292 gatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 41841212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 413
Target Start/End: Original strand, 40054225 - 40054359
Alignment:
Q  279 tactgcatataagtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagccatcctatctttcaactcatacctttctc 378  Q
    ||||||||| |||||||||||||  |||||| |||||||||||| |||||| | |||||||||  ||| || |  |    ||| || |||||||||||||    
T  40054225 tactgcataaaagtcccacatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctcattttaattcatacctttctc 40054324  T
Q  379 ggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||    
T  40054325 ggccttttggctaagatcaagtgtagtatctgttc 40054359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 44878977 - 44879030
Alignment:
Q  360 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44879030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 44880944 - 44880891
Alignment:
Q  360 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44880891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 10944509 - 10944459
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttc 10944459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 37679757 - 37679802
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 37679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 37682057 - 37682104
Alignment:
Q  366 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttc 37682104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 42220985 - 42220909
Alignment:
Q  333 gatataaaatcagaagccatcctatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 409  Q
    ||||||||| |||| || | | || |||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  42220985 gatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 42555198 - 42555144
Alignment:
Q  358 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 412  Q
    |||||||||||||||||||| |  |||||||||||||||||||| || |||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtt 42555144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 44582870 - 44582900
Alignment:
Q  383 ttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttc 44582900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 43849973 - 43850096
Alignment:
Q  290 agtcccacatcgggtaatgaggaaaggaactgaatagacagttgatataaaatcagaagcc-atcctatctttcaactcatacctttctcggccttttgg 388  Q
    |||||||||||||||||| | ||||||| |||| |||||||  ||||||||| |||| ||  | ||| | ||||||||||||||||||||||||||||||    
T  43849973 agtcccacatcgggtaatcaagaaaggatctgagtagacagaggatataaaagcagatgcgtagcct-tatttcaactcatacctttctcggccttttgg 43850071  T
Q  389 ctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||    
T  43850072 ctaagatcaagtgtagtatctgttc 43850096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 8973302 - 8973359
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8973302 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8973359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 8979312 - 8979369
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979312 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8979369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 9026776 - 9026833
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026776 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9026833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 30731998 - 30732055
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731998 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 30732055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 9023439 - 9023494
Alignment:
Q  358 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023439 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9023494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 9032043 - 9032100
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9032043 atctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttc 9032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 32918074 - 32918127
Alignment:
Q  360 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 32918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 8984686 - 8984740
Alignment:
Q  359 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8984686 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttc 8984740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 9008018 - 9008068
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9008068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 9020837 - 9020894
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  9020837 atctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttc 9020894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 2841125 - 2841077
Alignment:
Q  365 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 2841077  T

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Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 30733985 - 30734035
Alignment:
Q  363 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttc 30734035  T

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Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 9030388 - 9030445
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||    
T  9030388 atctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttc 9030445  T

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Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 19232504 - 19232459
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttc 19232459  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 8988445 - 8988502
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||    
T  8988445 atctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttc 8988502  T

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Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 9016483 - 9016540
Alignment:
Q  356 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||| ||||||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  9016483 atcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttc 9016540  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 8992139 - 8992195
Alignment:
Q  357 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||| ||||||| |||||||| | |||||||||||||||||||||||||| |||||    
T  8992139 tcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttc 8992195  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 43849750 - 43849884
Alignment:
Q  32 tagccttcaaattctgaaacatgatcattactcaaaataaaattttgtgtgcgtaggctcatagtttgtatgattgattgaaagactattggaatttgag 131  Q
    |||||||||| || ||||| || |  |||||||||||||||||| ||||||    | |||||||||||||||||| ||||  ||||||||  ||||||||    
T  43849750 tagccttcaacttgtgaaatatcacgattactcaaaataaaattgtgtgtg----gtctcatagtttgtatgattcattg-cagactatttaaatttgag 43849844  T
Q  132 atat-aat---atatttatttcacattttgatactggagg 167  Q
    |||| |||   ||||||||||  |||||||||||||||||    
T  43849845 atatgaatatgatatttatttaccattttgatactggagg 43849884  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  369 tacctttctcggccttttggctaagatcaagtgtag 404  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 10763978 - 10763938
Alignment:
Q  373 tttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    |||||||| |||||| ||||||||||||||||||| |||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttc 10763938  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 15758608 - 15758563
Alignment:
Q  368 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 413  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttc 15758563  T

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