View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2902_low_6 (Length: 413)
Name: NF2902_low_6
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2902_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 50307913 - 50307688
Alignment:
| Q |
17 |
atcttcatgttcatctttgttttgatcttcttttgctacttcttctgacactataggaatcacctctttctcattctcgttatcagattgaatgtgtaca |
116 |
Q |
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| T |
50307913 |
atcttcatgttcatctttgttttgatcttcttttgctacttcttctgacactataggaatcacctctttctcattctcgttatcagattgaatgtgtaca |
50307814 |
T |
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| Q |
117 |
atattttgatcatttccttgattttgttcaagttcaaagtcaccatgatcgtgcgattgattgatcttaggtacattttcaacttgatcatgttcttgaa |
216 |
Q |
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| T |
50307813 |
atattttgatcatttccttgattttgttcaagttcaaagtcaccatgatcgtgcgattgattgatcttaggtacattttcaacttgatcatgttcttgaa |
50307714 |
T |
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| Q |
217 |
tattctcaatttcttctacttcccca |
242 |
Q |
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| T |
50307713 |
tattctcaattttttctacttcccca |
50307688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 193 - 406
Target Start/End: Complemental strand, 50307410 - 50307200
Alignment:
| Q |
193 |
tttcaacttgatcatgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagt |
292 |
Q |
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| T |
50307410 |
tttcaacttgatcatgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagt |
50307311 |
T |
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| Q |
293 |
ttcaacaacattgattgtttctgttgtttcttcattattagtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttgga |
392 |
Q |
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| T |
50307310 |
ttcaacaacattgattgtttctgttgtttcttc---attagtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttgga |
50307214 |
T |
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| Q |
393 |
gtctttgatgatgt |
406 |
Q |
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| T |
50307213 |
gtctttgatgatgt |
50307200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 50307678 - 50307605
Alignment:
| Q |
171 |
gattgattgatcttaggtacattttcaacttgatcatgttcttgaatattctcaatttcttctacttccccagc |
244 |
Q |
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|||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
50307678 |
gattgattaatctcaggtacattttcaacttgatcacgttctagaatattctcaattttttctacttccccagc |
50307605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 50307516 - 50307448
Alignment:
| Q |
171 |
gattgattgatcttaggtacattttcaacttgatcatgttcttgaatattctcaatttcttctacttcc |
239 |
Q |
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| T |
50307516 |
gattgattaatctcaggtatattttcaacttgatcacgttcttgaatattctcaattttttctacttcc |
50307448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 50307597 - 50307529
Alignment:
| Q |
171 |
gattgattgatcttaggtacattttcaacttgatcatgttcttgaatattctcaatttcttctacttcc |
239 |
Q |
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|||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
50307597 |
gattgattaatctcaggtacattatcaacttgatcgcgttcttgaatattctcaattttttctacttcc |
50307529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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