View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2902_low_8 (Length: 405)
Name: NF2902_low_8
Description: NF2902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2902_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 37 - 396
Target Start/End: Original strand, 11859966 - 11860325
Alignment:
| Q |
37 |
gaacaactacttatatagaatgaatcggttgatgcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaaga |
136 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11859966 |
gaacaactgcttgtatagaatgaatccgttgatgcataaactcgcaaggcaagaaatcgctggtaacgaaaacatcaccgtggatgtgatgggggaaagg |
11860065 |
T |
|
| Q |
137 |
gttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggacca |
236 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11860066 |
gttcaagatggaatgctgcgagtttcgttcgattttgctttagatctttcatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggacct |
11860165 |
T |
|
| Q |
237 |
ttcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgct |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11860166 |
ttcttttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaacttgtgataagatcttcgacaccttcaagtgctcgct |
11860265 |
T |
|
| Q |
337 |
acgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgatgatgt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11860266 |
acgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgt |
11860325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 37 - 396
Target Start/End: Original strand, 11827831 - 11828190
Alignment:
| Q |
37 |
gaacaactacttatatagaatgaatcggttgatgcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaaga |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| |||| ||| |
|
|
| T |
11827831 |
gaacaactacttatatagaatgaatcggttaatgcataaactcgcaagacaagaaattgctggtgacgaaaacatcaccgtggatgtgatgggggagaga |
11827930 |
T |
|
| Q |
137 |
gttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggacca |
236 |
Q |
| |
|
|||| | || | ||| |||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
11827931 |
gttcgtggcgggacgctgcgagtttcgttcaattttgctttagatctttcatgtgagatccctgattcggtgtttcagacagcaaagaaactaaggacca |
11828030 |
T |
|
| Q |
237 |
ttcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgct |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
11828031 |
ttcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgtgataagatcttcgacaccttcaagtactcgct |
11828130 |
T |
|
| Q |
337 |
acgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgatgatgt |
396 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
11828131 |
acgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgt |
11828190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 390
Target Start/End: Original strand, 12038801 - 12039084
Alignment:
| Q |
104 |
gaaaacatcaccatggatgtgatgcgggaaagagttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatt |
203 |
Q |
| |
|
|||||||||||| ||||| |||| |||| | ||||| |||||||||||||||||||| || |||| |||||||||| | |||| |||||| |||| |
|
|
| T |
12038801 |
gaaaacatcaccgtggattcgatgggggagggtgttcacgatggaatgctacgagtttcgtttgattatgctttagatttgttgtgtgggatcccagatt |
12038900 |
T |
|
| Q |
204 |
tggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttg |
303 |
Q |
| |
|
|||||| ||||||| || ||||| ||||||||||||||||||||||||| | ||||||||| |||||| | |||||| || ||||||||||||| || |
|
|
| T |
12038901 |
gtgtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctg |
12039000 |
T |
|
| Q |
304 |
tgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattga |
390 |
Q |
| |
|
||| |||||||| |||||||||| ||| | |||||||| ||| | ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
12039001 |
tgataagatctttaacaccttcaa-agct--atgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattga |
12039084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 378
Target Start/End: Complemental strand, 11902573 - 11902250
Alignment:
| Q |
49 |
atatagaatgaatcggttgatgcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaagagttcaagatgga |
148 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || || |||| || | |||||||| || || || |||| |||| | |||| ||| |||| |
|
|
| T |
11902573 |
atatagaatgaatcggttaatgcataaactcgcaaggctag---tcacctgtgaagaaaacatgactgtgaattcgatgggggataaagttaaaggtgga |
11902477 |
T |
|
| Q |
149 |
atgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggaccattcttttgccat |
248 |
Q |
| |
|
||| | |||| |||||| ||||||||||| ||||| |||||| |||||| || ||| |||| | |||||||||||||| || |||||||||||||| | |
|
|
| T |
11902476 |
atgttgcgagcttcatttgattttgctttggatctgtcatgtgggatcccagacttgttgttcgataaagcaaagaaactgagaaccattcttttgccgt |
11902377 |
T |
|
| Q |
249 |
acaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttgga |
348 |
Q |
| |
|
||| || ||||||||||| ||||| || ||||| ||| ||||||||||||| || || ||||||||| ||||||||||| || ||||| ||| |||| |
|
|
| T |
11902376 |
acagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatcttcaacaccttcaag---tccctacgtgtgctgga |
11902280 |
T |
|
| Q |
349 |
tctacatgatttggggatcaagacggttcc |
378 |
Q |
| |
|
||||||||| |||||||| |||| |||||| |
|
|
| T |
11902279 |
tctacatgacttggggattaagatggttcc |
11902250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 371
Target Start/End: Original strand, 11731708 - 11731945
Alignment:
| Q |
131 |
gaaagagttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaa |
230 |
Q |
| |
|
|||| |||| |||| |||||||| |||| ||| || ||||||| ||| |||||| | |||| ||| || |||| | ||||| | |||||||||||| | |
|
|
| T |
11731708 |
gaaaaagttgaagaaggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgttt---atagcaaagaaactga |
11731804 |
T |
|
| Q |
231 |
ggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaa |
327 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||| |||||| || ||||| ||| |||| || |||| ||||| ||||||||| |||||||||| |
|
|
| T |
11731805 |
ggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaa |
11731904 |
T |
|
| Q |
328 |
gtgctcgctacgcgtgttggatctacatgatttggggatcaaga |
371 |
Q |
| |
|
| || | | |||||||||||||||||| ||||||||||||| |
|
|
| T |
11731905 |
g---tccatgcacgtgttggatctacatgacttggggatcaaga |
11731945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University